# TARGET T0277 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0277.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 12.5384 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.007 0.005 0.025 0.167 0.141 0.655 2 A 0.004 0.005 0.022 0.519 0.137 0.313 3 S 0.001 0.002 0.023 0.793 0.051 0.131 4 L 0.001 0.001 0.004 0.992 0.003 0.002 5 A 0.001 0.001 0.002 0.994 0.002 0.001 6 R 0.001 0.001 0.002 0.994 0.002 0.001 7 A 0.001 0.001 0.001 0.997 0.001 0.001 8 V 0.001 0.001 0.001 0.997 0.001 0.001 9 E 0.001 0.001 0.001 0.998 0.001 0.001 10 R 0.001 0.001 0.001 0.996 0.001 0.001 11 L 0.001 0.001 0.001 0.993 0.002 0.003 12 K 0.001 0.001 0.005 0.988 0.003 0.004 13 A 0.001 0.001 0.009 0.980 0.005 0.006 14 A 0.001 0.001 0.024 0.912 0.028 0.034 15 L 0.001 0.002 0.029 0.830 0.077 0.060 16 E 0.003 0.005 0.021 0.623 0.159 0.189 17 R 0.002 0.003 0.011 0.183 0.254 0.547 18 P 0.001 0.002 0.009 0.041 0.281 0.666 19 K 0.001 0.001 0.165 0.370 0.264 0.199 20 D 0.003 0.002 0.133 0.627 0.172 0.064 21 E 0.001 0.001 0.062 0.883 0.044 0.009 22 F 0.003 0.001 0.024 0.942 0.019 0.011 23 I 0.005 0.002 0.013 0.966 0.008 0.007 24 R 0.010 0.001 0.011 0.955 0.012 0.013 25 D 0.004 0.001 0.005 0.967 0.011 0.012 26 S 0.008 0.001 0.007 0.967 0.010 0.008 27 A 0.029 0.001 0.010 0.929 0.015 0.016 28 I 0.029 0.001 0.013 0.938 0.013 0.006 29 Q 0.039 0.001 0.009 0.926 0.015 0.010 30 R 0.029 0.001 0.006 0.935 0.009 0.019 31 F 0.041 0.002 0.008 0.877 0.018 0.054 32 E 0.026 0.001 0.005 0.949 0.008 0.011 33 F 0.023 0.001 0.003 0.963 0.005 0.005 34 T 0.010 0.001 0.002 0.978 0.003 0.007 35 F 0.003 0.001 0.004 0.988 0.002 0.002 36 E 0.002 0.001 0.007 0.987 0.002 0.001 37 L 0.003 0.001 0.011 0.980 0.004 0.002 38 A 0.001 0.001 0.008 0.984 0.003 0.003 39 W 0.001 0.001 0.009 0.975 0.008 0.007 40 K 0.001 0.001 0.007 0.987 0.004 0.001 41 T 0.001 0.001 0.004 0.993 0.002 0.001 42 L 0.001 0.001 0.002 0.996 0.001 0.001 43 K 0.001 0.001 0.002 0.996 0.001 0.001 44 T 0.001 0.001 0.002 0.995 0.002 0.001 45 F 0.001 0.001 0.003 0.989 0.004 0.004 46 L 0.001 0.001 0.008 0.972 0.011 0.008 47 E 0.001 0.001 0.010 0.970 0.013 0.006 48 L 0.001 0.001 0.006 0.968 0.018 0.007 49 Q 0.001 0.001 0.003 0.924 0.024 0.047 50 G 0.002 0.002 0.004 0.062 0.093 0.836 51 L 0.033 0.018 0.031 0.053 0.192 0.674 52 E 0.197 0.054 0.070 0.071 0.255 0.353 53 A 0.153 0.045 0.078 0.064 0.334 0.326 54 R 0.074 0.033 0.033 0.068 0.375 0.416 55 S 0.027 0.009 0.011 0.044 0.347 0.563 56 P 0.006 0.004 0.028 0.651 0.139 0.172 57 R 0.003 0.002 0.013 0.908 0.046 0.029 58 A 0.001 0.001 0.010 0.969 0.014 0.006 59 A 0.001 0.001 0.007 0.984 0.005 0.003 60 I 0.002 0.001 0.005 0.987 0.003 0.002 61 R 0.002 0.001 0.004 0.988 0.003 0.002 62 G 0.003 0.001 0.004 0.986 0.005 0.002 63 A 0.002 0.001 0.006 0.980 0.008 0.003 64 F 0.003 0.001 0.013 0.967 0.011 0.005 65 Q 0.003 0.001 0.027 0.950 0.012 0.007 66 V 0.004 0.001 0.051 0.907 0.019 0.018 67 G 0.011 0.005 0.089 0.456 0.080 0.360 68 L 0.036 0.039 0.059 0.065 0.201 0.599 69 L 0.056 0.044 0.037 0.033 0.441 0.390 70 P 0.046 0.022 0.019 0.037 0.567 0.310 71 E 0.012 0.009 0.022 0.147 0.421 0.389 72 D 0.007 0.005 0.033 0.725 0.150 0.079 73 P 0.007 0.003 0.025 0.889 0.054 0.022 74 F 0.010 0.003 0.020 0.924 0.030 0.013 75 W 0.020 0.003 0.016 0.930 0.020 0.011 76 L 0.024 0.001 0.021 0.928 0.016 0.009 77 E 0.019 0.001 0.017 0.929 0.020 0.013 78 M 0.015 0.002 0.018 0.911 0.027 0.026 79 L 0.010 0.003 0.021 0.888 0.035 0.043 80 E 0.015 0.002 0.043 0.744 0.113 0.082 81 L 0.024 0.005 0.045 0.655 0.174 0.097 82 R 0.046 0.010 0.033 0.469 0.212 0.230 83 N 0.053 0.009 0.018 0.263 0.258 0.399 84 L 0.076 0.017 0.012 0.382 0.186 0.326 85 T 0.102 0.023 0.009 0.421 0.112 0.333 86 N 0.109 0.009 0.044 0.412 0.139 0.286 87 H 0.135 0.011 0.095 0.280 0.161 0.320 88 T 0.143 0.027 0.075 0.189 0.259 0.308 89 Y 0.055 0.037 0.013 0.121 0.216 0.558 90 D 0.007 0.005 0.002 0.040 0.139 0.807 91 E 0.001 0.001 0.008 0.980 0.009 0.003 92 A 0.001 0.001 0.013 0.978 0.007 0.001 93 L 0.001 0.001 0.011 0.986 0.003 0.001 94 A 0.001 0.001 0.004 0.993 0.002 0.001 95 E 0.001 0.001 0.003 0.993 0.002 0.001 96 R 0.001 0.001 0.004 0.992 0.003 0.001 97 I 0.001 0.001 0.004 0.991 0.003 0.001 98 Y 0.001 0.001 0.019 0.973 0.006 0.002 99 A 0.001 0.001 0.027 0.958 0.011 0.004 100 E 0.001 0.001 0.018 0.945 0.011 0.024 101 L 0.001 0.003 0.025 0.693 0.061 0.217 102 P 0.001 0.001 0.086 0.787 0.071 0.056 103 K 0.001 0.001 0.075 0.872 0.038 0.013 104 A 0.001 0.001 0.025 0.955 0.013 0.006 105 L 0.001 0.001 0.009 0.971 0.011 0.008 106 E 0.001 0.001 0.008 0.972 0.011 0.009 107 R 0.001 0.001 0.008 0.967 0.013 0.011 108 F 0.001 0.001 0.004 0.977 0.007 0.010 109 Q 0.001 0.001 0.003 0.987 0.004 0.004 110 E 0.001 0.001 0.003 0.989 0.004 0.003 111 L 0.001 0.001 0.003 0.987 0.004 0.005 112 L 0.001 0.001 0.006 0.976 0.007 0.009 113 R 0.001 0.001 0.008 0.971 0.009 0.010 114 R 0.001 0.001 0.005 0.975 0.007 0.011 115 L 0.001 0.001 0.007 0.909 0.024 0.059 116 E 0.004 0.005 0.010 0.339 0.098 0.543 117 E 0.004 0.005 0.007 0.133 0.106 0.746 118 P 0.002 0.003 0.002 0.019 0.069 0.904 119 A 0.001 0.001 0.001 0.002 0.031 0.965