# TARGET T0277 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0277.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 12.5384 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.006 0.447 0.001 0.011 0.443 0.001 0.001 0.001 0.066 0.023 0.001 0.002 2 A 0.001 0.001 0.064 0.001 0.035 0.828 0.001 0.001 0.001 0.022 0.048 0.001 0.001 3 S 0.001 0.001 0.031 0.001 0.029 0.875 0.001 0.001 0.001 0.018 0.045 0.001 0.001 4 L 0.001 0.001 0.009 0.001 0.006 0.974 0.001 0.001 0.001 0.003 0.008 0.001 0.001 5 A 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.002 0.001 0.001 6 R 0.001 0.001 0.002 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.002 0.001 0.001 7 A 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 8 V 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 9 E 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 10 R 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 11 L 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 12 K 0.001 0.001 0.001 0.001 0.004 0.981 0.001 0.001 0.001 0.001 0.013 0.001 0.001 13 A 0.001 0.001 0.001 0.001 0.008 0.893 0.001 0.001 0.001 0.002 0.096 0.001 0.001 14 A 0.001 0.001 0.011 0.001 0.027 0.789 0.001 0.001 0.001 0.007 0.165 0.001 0.001 15 L 0.001 0.009 0.078 0.001 0.038 0.600 0.001 0.001 0.001 0.048 0.225 0.001 0.001 16 E 0.001 0.009 0.226 0.001 0.026 0.201 0.001 0.001 0.001 0.162 0.373 0.001 0.001 17 R 0.001 0.003 0.647 0.001 0.001 0.003 0.001 0.001 0.001 0.341 0.005 0.001 0.001 18 P 0.001 0.005 0.935 0.001 0.001 0.002 0.001 0.001 0.001 0.046 0.011 0.001 0.001 19 K 0.001 0.009 0.307 0.001 0.083 0.262 0.001 0.001 0.001 0.129 0.209 0.001 0.001 20 D 0.001 0.001 0.020 0.001 0.051 0.872 0.001 0.001 0.001 0.017 0.040 0.001 0.001 21 E 0.001 0.001 0.007 0.001 0.011 0.975 0.001 0.001 0.001 0.002 0.005 0.001 0.001 22 F 0.001 0.001 0.005 0.001 0.002 0.986 0.001 0.001 0.001 0.002 0.003 0.001 0.001 23 I 0.001 0.001 0.004 0.001 0.003 0.983 0.001 0.001 0.001 0.002 0.005 0.001 0.001 24 R 0.001 0.001 0.003 0.001 0.003 0.983 0.001 0.001 0.001 0.002 0.005 0.001 0.001 25 D 0.001 0.001 0.010 0.001 0.005 0.962 0.001 0.001 0.001 0.005 0.014 0.001 0.002 26 S 0.001 0.001 0.012 0.001 0.006 0.947 0.001 0.001 0.001 0.004 0.027 0.001 0.001 27 A 0.001 0.002 0.010 0.001 0.005 0.923 0.001 0.001 0.001 0.004 0.052 0.001 0.001 28 I 0.002 0.001 0.007 0.001 0.006 0.913 0.001 0.001 0.001 0.004 0.063 0.001 0.002 29 Q 0.003 0.001 0.017 0.001 0.012 0.847 0.001 0.001 0.001 0.024 0.090 0.003 0.002 30 R 0.002 0.001 0.031 0.001 0.016 0.723 0.001 0.001 0.001 0.036 0.180 0.001 0.008 31 F 0.002 0.003 0.065 0.001 0.009 0.732 0.001 0.001 0.007 0.057 0.109 0.006 0.008 32 E 0.005 0.009 0.123 0.002 0.003 0.732 0.002 0.001 0.009 0.035 0.033 0.008 0.038 33 F 0.006 0.005 0.027 0.001 0.001 0.903 0.001 0.001 0.004 0.013 0.009 0.022 0.008 34 T 0.003 0.001 0.015 0.001 0.001 0.959 0.001 0.001 0.002 0.004 0.005 0.001 0.010 35 F 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 36 E 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 37 L 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 38 A 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 W 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 K 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 41 T 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 42 L 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 43 K 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 44 T 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 45 F 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.003 0.001 0.001 46 L 0.001 0.001 0.001 0.001 0.001 0.988 0.001 0.001 0.001 0.002 0.008 0.001 0.001 47 E 0.001 0.001 0.003 0.001 0.004 0.950 0.001 0.001 0.001 0.003 0.039 0.001 0.001 48 L 0.001 0.001 0.011 0.001 0.006 0.916 0.001 0.001 0.001 0.003 0.062 0.001 0.001 49 Q 0.001 0.001 0.010 0.001 0.004 0.321 0.001 0.001 0.001 0.022 0.641 0.001 0.001 50 G 0.001 0.002 0.071 0.001 0.003 0.012 0.001 0.001 0.001 0.076 0.832 0.001 0.001 51 L 0.001 0.018 0.861 0.001 0.002 0.005 0.001 0.001 0.021 0.065 0.009 0.006 0.010 52 E 0.002 0.064 0.627 0.003 0.018 0.013 0.002 0.002 0.061 0.070 0.078 0.026 0.033 53 A 0.002 0.042 0.397 0.005 0.084 0.030 0.005 0.007 0.040 0.088 0.244 0.006 0.049 54 R 0.001 0.028 0.359 0.004 0.028 0.034 0.002 0.005 0.030 0.351 0.124 0.026 0.008 55 S 0.001 0.007 0.477 0.001 0.003 0.012 0.001 0.001 0.004 0.486 0.006 0.001 0.003 56 P 0.001 0.001 0.082 0.001 0.014 0.822 0.001 0.001 0.001 0.038 0.041 0.001 0.001 57 R 0.001 0.001 0.001 0.001 0.002 0.991 0.001 0.001 0.001 0.001 0.004 0.001 0.001 58 A 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 59 A 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 60 I 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.001 0.001 0.001 61 R 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.004 0.001 0.001 62 G 0.001 0.001 0.001 0.001 0.001 0.989 0.001 0.001 0.001 0.001 0.006 0.001 0.001 63 A 0.001 0.001 0.004 0.001 0.002 0.980 0.001 0.001 0.001 0.001 0.012 0.001 0.001 64 F 0.001 0.001 0.013 0.001 0.005 0.955 0.001 0.001 0.001 0.004 0.017 0.001 0.001 65 Q 0.002 0.002 0.022 0.001 0.017 0.901 0.001 0.001 0.001 0.008 0.038 0.003 0.005 66 V 0.006 0.002 0.022 0.001 0.031 0.684 0.001 0.001 0.002 0.016 0.223 0.006 0.005 67 G 0.003 0.004 0.075 0.001 0.028 0.274 0.001 0.001 0.002 0.043 0.561 0.004 0.005 68 L 0.002 0.019 0.452 0.003 0.021 0.057 0.002 0.001 0.009 0.181 0.227 0.002 0.024 69 L 0.001 0.017 0.719 0.001 0.002 0.003 0.001 0.001 0.006 0.203 0.013 0.032 0.003 70 P 0.001 0.014 0.754 0.001 0.005 0.003 0.001 0.001 0.003 0.104 0.091 0.002 0.023 71 E 0.001 0.011 0.454 0.001 0.031 0.032 0.001 0.001 0.002 0.231 0.229 0.001 0.007 72 D 0.001 0.002 0.114 0.001 0.068 0.398 0.001 0.001 0.001 0.287 0.129 0.001 0.001 73 P 0.001 0.002 0.047 0.001 0.020 0.851 0.001 0.001 0.001 0.026 0.048 0.001 0.003 74 F 0.001 0.006 0.021 0.001 0.006 0.938 0.001 0.001 0.001 0.008 0.010 0.004 0.003 75 W 0.004 0.002 0.008 0.001 0.002 0.970 0.001 0.001 0.001 0.001 0.002 0.001 0.007 76 L 0.003 0.001 0.003 0.001 0.001 0.987 0.001 0.001 0.001 0.001 0.002 0.001 0.001 77 E 0.007 0.001 0.004 0.001 0.001 0.973 0.001 0.001 0.001 0.001 0.003 0.004 0.005 78 M 0.004 0.001 0.005 0.001 0.002 0.973 0.001 0.001 0.001 0.002 0.005 0.002 0.005 79 L 0.001 0.001 0.006 0.001 0.004 0.977 0.001 0.001 0.001 0.002 0.007 0.001 0.001 80 E 0.001 0.001 0.003 0.001 0.010 0.965 0.001 0.001 0.001 0.002 0.017 0.001 0.001 81 L 0.001 0.001 0.005 0.001 0.013 0.924 0.001 0.001 0.001 0.003 0.053 0.001 0.001 82 R 0.001 0.002 0.023 0.001 0.017 0.704 0.001 0.001 0.001 0.030 0.222 0.001 0.001 83 N 0.001 0.007 0.111 0.002 0.021 0.181 0.001 0.001 0.002 0.063 0.609 0.001 0.003 84 L 0.001 0.024 0.357 0.002 0.047 0.154 0.001 0.002 0.008 0.152 0.235 0.005 0.012 85 T 0.002 0.037 0.306 0.003 0.050 0.131 0.001 0.003 0.020 0.186 0.234 0.014 0.012 86 N 0.002 0.023 0.355 0.004 0.035 0.108 0.002 0.002 0.014 0.254 0.175 0.005 0.020 87 H 0.003 0.012 0.260 0.003 0.020 0.128 0.001 0.002 0.015 0.440 0.089 0.014 0.013 88 T 0.003 0.032 0.247 0.001 0.032 0.356 0.002 0.003 0.016 0.137 0.136 0.008 0.027 89 Y 0.004 0.068 0.208 0.001 0.022 0.378 0.001 0.001 0.012 0.146 0.129 0.017 0.013 90 D 0.001 0.007 0.417 0.001 0.006 0.406 0.001 0.001 0.002 0.122 0.026 0.002 0.012 91 E 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 92 A 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 93 L 0.001 0.001 0.001 0.001 0.002 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 94 A 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 95 E 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 96 R 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 97 I 0.001 0.001 0.001 0.001 0.002 0.990 0.001 0.001 0.001 0.001 0.007 0.001 0.001 98 Y 0.001 0.001 0.002 0.001 0.005 0.976 0.001 0.001 0.001 0.001 0.016 0.001 0.001 99 A 0.001 0.001 0.001 0.001 0.007 0.950 0.001 0.001 0.001 0.001 0.042 0.001 0.001 100 E 0.001 0.001 0.004 0.001 0.014 0.869 0.001 0.001 0.001 0.001 0.112 0.001 0.001 101 L 0.001 0.002 0.416 0.001 0.009 0.345 0.001 0.001 0.001 0.201 0.027 0.001 0.001 102 P 0.001 0.001 0.370 0.001 0.179 0.229 0.001 0.001 0.001 0.117 0.104 0.001 0.001 103 K 0.001 0.003 0.037 0.001 0.155 0.487 0.001 0.001 0.001 0.042 0.275 0.001 0.001 104 A 0.001 0.001 0.015 0.001 0.083 0.734 0.001 0.001 0.001 0.011 0.156 0.001 0.001 105 L 0.001 0.001 0.038 0.001 0.006 0.920 0.001 0.001 0.001 0.023 0.011 0.001 0.001 106 E 0.001 0.001 0.006 0.001 0.004 0.979 0.001 0.001 0.001 0.003 0.008 0.001 0.001 107 R 0.001 0.001 0.002 0.001 0.001 0.989 0.001 0.001 0.001 0.001 0.006 0.001 0.001 108 F 0.001 0.001 0.002 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.002 0.001 0.001 109 Q 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 110 E 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 111 L 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.004 0.001 0.001 112 L 0.001 0.001 0.001 0.001 0.003 0.984 0.001 0.001 0.001 0.001 0.011 0.001 0.001 113 R 0.001 0.001 0.002 0.001 0.010 0.943 0.001 0.001 0.001 0.002 0.043 0.001 0.001 114 R 0.001 0.001 0.005 0.001 0.018 0.877 0.001 0.001 0.001 0.004 0.096 0.001 0.001 115 L 0.001 0.002 0.076 0.001 0.017 0.692 0.001 0.001 0.001 0.056 0.155 0.001 0.001 116 E 0.001 0.014 0.318 0.002 0.027 0.135 0.001 0.001 0.001 0.124 0.376 0.001 0.003 117 E 0.001 0.004 0.751 0.001 0.002 0.011 0.001 0.001 0.001 0.211 0.016 0.002 0.001 118 P 0.001 0.003 0.961 0.001 0.001 0.002 0.001 0.001 0.001 0.023 0.009 0.001 0.001 119 A 0.001 0.004 0.975 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.004 0.001 0.001