(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.cse.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0277 1wj8, Thermus thermophilus
    • gi|27573673|pdb|1JOG|A_15:143 Chain A, Structure Of Hi0074 From Heamophilus Influenzae Reveals The Fold Of A Substrate Binding Domain Of A Nucleotidyltransferase [Taxonomy]
    • gi|27573674|pdb|1JOG|B Chain B, Structure Of Hi0074 From Heamophilus Influenzae Reveals The Fold Of A Substrate Binding Domain Of A Nucleotidyltransferase [Taxonomy]
    • gi|27573675|pdb|1JOG|C Chain C, Structure Of Hi0074 From Heamophilus Influenzae Reveals The Fold Of A Substrate Binding Domain Of A Nucleotidyltransferase [Taxonomy]
    • gi|27573676|pdb|1JOG|D Chain D, Structure Of Hi0074 From Heamophilus Influenzae Reveals The Fold Of A Substrate Binding Domain Of A Nucleotidyltransferase [Taxonomy] 
                 10                       20              30        40 
                 |                        |               |         | 
   1 ...MASLARAVERL..KA.ALE....R....P..K..D...EF...IRDSAIQRFEFTFELAWKT
   2 lqrFKDFENALMRL..KE.ALAi...E....V..T..N...EI...IIDGVIQRFEFTFELAWKI
   3 nlkLEKFRKAFMTL..ED.IYL....K....PttE..D...RA...YIDATIQRFEFTFELAWKF
   4 nlkLEKFRKAFMKL..ED.IYL....K....PttE..D...RA...YIDATIQRFEFTFELAWKF
   5 ...MASLARAVERL..KA.ALE....Q....P..K..D...EF...IRDSAIQRFEFTFELAWKT
   6 daaFYSLEQTVVQIsdRN.WFDm...Q....P..SivQ...DT...LIAGAIQKFEFVYELSLKM
   7 ytkLDNFEKAYARL..KE.GSNry..D....G..N..D...DL...MRDGLIQRFEFTFELAWKT
   8 daaFYSLEQTVVQIsdRN.WFDm...Q....P..SivQ...DT...LIAGAIQKFEFVYELSLKM
   9 daaFYSLEQTVVQIsdRN.WFDx...Q....P..SivQ...DT...LIAGAIQKFEFVYELSLKX
  10 nerISDFANAFSRL..QE.AFK....K....Di.D..D...DI...IIDGIIQRFEFTFEQSWKV
  11 mkkYENYVSALKSL..RK.APE....Q....Dl.S..N...DF...IQSGIIDKFELQFELGWKL
  12 iqrFKHFTKALWQL..EQ.AIElsrtR....A..L..S...EL...ETLGLIQAFEYTHELAWKT
  13 mkkYENYVSALNSL..RK.APE....Q....Dl.G..N...DF...IQSGIIDKFGLQFELGWKL
  14 qwrLNNFRKALLQL..DE.AMElmsrR....P..L..S...KL...ERQGAFHVFECSYELAWNT
  15 vrvIQALDAALRIVndRS.WFD....A....Q..S..A...EVqqtIMAGVVQNFEFVYELCIKM
  16 lerIQVAEKALATL..KElAFL....E....D..P..S...PV...ERDAAIQRFEYTFEAFWKA
  17 iqrLENYQKANQRL..QN.ACQ....Q....D..Sy.T...EL...ERAGLIQMFEFTYELSWKT
  18 aldLSGLEKAVKSF..EE.AVD....YsnnlP..E..NiaaDI...VRDSVIQRFEYTYELGWKL
  19 ...-----------..--.---....-....-..-..M...EL...EELGLIQAFEFTHELSWLL
  20 qntLRALETAYSMY..QR.AVEeq..E....Pt.T..Q...EV...LRMAIIKGFELAQEVSFRL
  21 qqrFSNYCSALEQL..ET.FFE....P....Pa.L..N...ER...EQQGLIKAFEYTFELSWNT
  22 lrtAATLEQALLAL..EK.TPSs...E....Di.L..F...DL...YRNAAIKSFELSLETAGKL
  23 ...-----------..--.---....-....-..-..-...--...-------------------
  24 daaFYSLEQTVVQIsdRN.WFDm...Q....P..SivQ...DT...LIAGAIQKFEFVYELSLKM
  25 ...-----------..--.---....-....-..-..-...--...-------------------


                         50                      60          70        
                         |                       |           |        
   1 LKTFL.E.....L.....Q.G....L..EARS....P.R...AAIRGAFQVGL..LP..ED.P..
   2 MKDYL.A.....Y.....E.G....I..EVNS....P.R...SAIKAAYSAGL..IQ..DG.E..
   3 LKEYF.S.....Q.....K.G....T..FLHY....P.K...EVIKEAFVAGI..IN..DE.S..
   4 LKEYF.S.....Q.....K.G....T..FLHY....P.K...EVIKEAFVAGI..IN..DE.S..
   5 LKTFL.E.....L.....Q.G....L..EARS....P.R...AAIRGAFQVGL..LP..ED.P..
   6 MKRQL.QqdainT.....D.D....I..GAYG....F.K...DILREALRFGL..IG..DM.S..
   7 LQAVF.E.....D.....E.Gl...I..GLNS....P.K...RILREAFATEV..IG..NE.E..
   8 MKRQL.QqdainT.....N.D....I..GAYG....F.K...DILREALRFGL..IE..DM.S..
   9 XKRQL.QqdainT.....D.D....I..GAYG....F.K...DILREALRFGL..IG..DX.S..
  10 MKLYL.E.....D.....Q.G....IldEALS....P.R...STIRLAFKYKI..IS..DG.D..
  11 FKALL.A.....Y.....E.Gdp..V..SASGs...P.R...DVLKTAFQYYD..FM..DE.S..
  12 LKDFL.E.....D.....K.G....Vy.NLYG....S.R...DSTREAFKRGL..ID..DG.E..
  13 FKALL.A.....Y.....E.Gdp..V..SASGs...P.R...DVLKTAFQYYD..FM..DE.S..
  14 LKDFL.V.....W.....Q.G....Ie.GIVG....S.R...DTIREAFSAGL..IA..DG.Q..
  15 IRRRL.E.....LdaafpE.E....V..DVSN....F.R...NFIRTAAEKGL..IT..DV.E..
  16 LQAYLrE.....K.....E.G....L..EGAS....P.K...GVIRLAREVGL..LR..DE.Ear
  17 LKDIL.N.....F.....E.G....Y..DAAS....P.R...AVIRTSLEAGL..VNs.DEcE..
  18 LQRWI.K.....L.....NiG....P..EEAE....P.RtkkDLFRLAAKKNL..ID..DP.S..
  19 IRDFL.V.....D.....Q.G....Va.GISG....S.R...DAVREAVVRQL..LPqgDE.T..
  20 IRRRL.R.....D.....F.G....Y..GIRRleatPvR...ELLRLAAQHSLlsIP..EV.E..
  21 LRDLL.R.....S.....Q.Gn...A..NLLG....S.S...DTLREAFQLGL..IS..DG.E..
  22 LRKAL.Kl....Y.....V.GsprsV..DALV....F.N...DLLRHAGKHGL..LDa.DGvE..
  23 -----.-.....-.....-.-....-..----....-.-...-MIKEAFVAGI..IN..DE.S..
  24 MKRQL.QqdainT.....D.D....I..GAYG....F.K...DIL--------..--..--.-..
  25 -----.-.....-.....-.-....-..----....-.-...-----------..--..-M.S..


           80         90       100                 110             
           |          |         |                   |             
   1 FWLEMLELR.NLTNHTYDEALAERIYAEL.P....K.ALERF....QELLRRLEEP....A
   2 MWIDMLMDR.NRTTHIYNSKMALEIYENIkR....R.YVSCF....EELSEKIRVNien.I
   3 LWIYMLTDRsNMISYTYDKKLADEIYNRI.R....N.YVPEL....KKLLNIIDLK....I
   4 LWIYMLTDRsNMISYTYDKKLADEIYNRI.R....T.YVPEL....KKLLNIIDLK....I
   5 FWLEMLELR.NLTNHTYDEALAERIYAEL.P....K.VLERF....QELLRRLEEP....A
   6 KWVAYRDMR.NITSHTYDQEKAMAVYAQI.D....D.FLIES....SFLLEQLRQRnqy.D
   7 LWLSMLDDR.NATVHIYNEMTAVRICQDIkG....K.YVPAF....GELVERIRERls..E
   8 KWVVYRDMR.NITSHTYDQEKAMAVYAQI.D....D.FLIES....RFLLEQLRQRn...-
   9 KWVAYRDXR.NITSHTYDQEKAXAVYAQI.D....D.FLIES....SFLLEQLRQRnqy.D
  10 IWIQMMLDR.NRTSHMYDETIAKNIVKRI.K....DtYMKEF....TKLQDFLQR-....-
  11 LWLRMLRDR.NDSAHIYDEERARRLVDAI.Iv...D.YIPEFervnQGLVVRYGEAln..D
  12 VWMDMIKSR.NLSSHTYNQEIADAIAGRIvE....R.YVTAF....QQLLNRLNIIaee.E
  13 LWLRMLRDR.NDSAHIYDEERARRLVDAI.Ia...D.YIPEFeranQGLVARYGEAln..D
  14 GWMRMLTDR.GRTLHTCNEETAEAILLDI.RqqhhP.LLEAL....ERMLSSRTEPs...A
  15 AWFRYRLLR.NMTSHTYDSAKALMVCQHA.G....E.LLAEA....QVVLKALDRRneqt-
  16 LALGMVDDR.SLTVHTYNEPLARAILRRL.P....D.YARLM....EQVLGRLRR-....-
  17 QLLTALGKR.NLLAHTYDENTSLEAERLIlK....E.YAPLL....HTIYTRLKEKscd.I
  18 PWFEFSEAR.NQVARTYNEKNAKYVYDVA.I....K.FLPAV....KVLLKELEQNn...D
  19 VWMAMIRSR.NLTSHPYNPAVAREIADLIvH....R.YGLAF....QQLSGVMLERassr-
  20 RWFTYRDNR.NSTAHDYGDAFVQQTLTLL.P....D.FIRDA....YALAERLRTGktiv-
  21 TWMLMIQDR.NLTSHQSH-----------.-....-.-----....----------....-
  22 RWLAYRANR.NNTAHDYGEGFANDTLKLL.P....G.YLADV....RALAGKLQEVfda.A
  23 LWIYMLTDR.NMISYTYDKKLADEIYNRI.R....N.YVPEL....KKLLNIIDLK....I
  24 ---------.-------------------.-....-.-----....----------....-
  25 KWVAYRDMR.NIASHTYDQEKAMAVYAQI.D....D.FLIES....RFLLEQLRQRnqy.D