# TARGET T0277 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0277.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 12.5384 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 M 0.003 0.003 0.006 0.072 0.012 0.009 0.894 2 A 0.009 0.013 0.028 0.466 0.028 0.044 0.412 3 S 0.007 0.018 0.027 0.634 0.060 0.036 0.218 4 L 0.001 0.001 0.005 0.977 0.001 0.006 0.011 5 A 0.001 0.001 0.001 0.997 0.001 0.001 0.001 6 R 0.001 0.001 0.002 0.996 0.001 0.001 0.001 7 A 0.001 0.001 0.002 0.996 0.001 0.002 0.001 8 V 0.001 0.001 0.001 0.998 0.001 0.001 0.001 9 E 0.001 0.001 0.001 0.998 0.001 0.002 0.001 10 R 0.001 0.001 0.001 0.994 0.001 0.005 0.001 11 L 0.001 0.001 0.001 0.990 0.001 0.008 0.001 12 K 0.001 0.001 0.003 0.992 0.001 0.005 0.001 13 A 0.001 0.001 0.004 0.975 0.001 0.020 0.001 14 A 0.001 0.001 0.011 0.925 0.001 0.059 0.003 15 L 0.001 0.002 0.030 0.718 0.037 0.173 0.039 16 E 0.012 0.011 0.056 0.297 0.126 0.287 0.212 17 R 0.007 0.005 0.002 0.017 0.362 0.016 0.591 18 P 0.002 0.003 0.001 0.006 0.015 0.008 0.966 19 K 0.004 0.007 0.074 0.202 0.090 0.207 0.416 20 D 0.006 0.003 0.102 0.386 0.115 0.226 0.163 21 E 0.014 0.003 0.070 0.695 0.055 0.057 0.105 22 F 0.021 0.008 0.010 0.872 0.022 0.022 0.045 23 I 0.028 0.004 0.009 0.894 0.010 0.018 0.038 24 R 0.043 0.003 0.007 0.893 0.014 0.017 0.023 25 D 0.033 0.001 0.009 0.900 0.017 0.022 0.019 26 S 0.061 0.002 0.019 0.816 0.030 0.041 0.031 27 A 0.137 0.006 0.025 0.729 0.020 0.050 0.034 28 I 0.213 0.009 0.027 0.674 0.017 0.029 0.030 29 Q 0.088 0.002 0.015 0.811 0.026 0.037 0.021 30 R 0.024 0.001 0.013 0.872 0.011 0.064 0.014 31 F 0.049 0.003 0.010 0.834 0.009 0.045 0.050 32 E 0.029 0.001 0.005 0.925 0.008 0.016 0.016 33 F 0.026 0.001 0.004 0.942 0.005 0.013 0.009 34 T 0.011 0.001 0.002 0.966 0.003 0.009 0.008 35 F 0.003 0.001 0.001 0.984 0.002 0.008 0.002 36 E 0.001 0.001 0.001 0.994 0.001 0.002 0.001 37 L 0.001 0.001 0.001 0.997 0.001 0.001 0.001 38 A 0.001 0.001 0.001 0.994 0.001 0.004 0.001 39 W 0.001 0.001 0.001 0.996 0.001 0.002 0.001 40 K 0.001 0.001 0.001 0.998 0.001 0.001 0.001 41 T 0.001 0.001 0.001 0.996 0.001 0.003 0.001 42 L 0.001 0.001 0.001 0.995 0.001 0.004 0.001 43 K 0.001 0.001 0.001 0.999 0.001 0.001 0.001 44 T 0.001 0.001 0.001 0.998 0.001 0.002 0.001 45 F 0.001 0.001 0.001 0.997 0.001 0.003 0.001 46 L 0.001 0.001 0.001 0.995 0.001 0.003 0.001 47 E 0.001 0.001 0.002 0.980 0.001 0.015 0.001 48 L 0.001 0.001 0.003 0.963 0.005 0.025 0.003 49 Q 0.001 0.001 0.003 0.472 0.013 0.503 0.008 50 G 0.001 0.001 0.003 0.028 0.030 0.899 0.037 51 L 0.029 0.013 0.004 0.016 0.065 0.019 0.853 52 E 0.215 0.040 0.020 0.023 0.052 0.017 0.634 53 A 0.218 0.024 0.052 0.057 0.081 0.042 0.526 54 R 0.126 0.023 0.041 0.100 0.283 0.074 0.353 55 S 0.072 0.021 0.013 0.062 0.386 0.016 0.429 56 P 0.005 0.002 0.043 0.776 0.015 0.055 0.104 57 R 0.001 0.001 0.023 0.938 0.007 0.015 0.014 58 A 0.001 0.001 0.014 0.978 0.002 0.003 0.003 59 A 0.001 0.001 0.008 0.985 0.001 0.003 0.002 60 I 0.001 0.001 0.005 0.984 0.001 0.008 0.001 61 R 0.001 0.001 0.005 0.982 0.001 0.011 0.001 62 G 0.001 0.001 0.003 0.975 0.001 0.021 0.001 63 A 0.002 0.001 0.011 0.950 0.003 0.022 0.010 64 F 0.007 0.002 0.021 0.913 0.012 0.034 0.012 65 Q 0.020 0.006 0.031 0.832 0.013 0.080 0.018 66 V 0.017 0.005 0.062 0.440 0.037 0.400 0.038 67 G 0.008 0.002 0.024 0.063 0.054 0.769 0.078 68 L 0.047 0.032 0.043 0.022 0.172 0.160 0.524 69 L 0.051 0.051 0.007 0.004 0.405 0.018 0.464 70 P 0.028 0.017 0.015 0.005 0.128 0.055 0.752 71 E 0.007 0.009 0.143 0.177 0.164 0.275 0.225 72 D 0.004 0.003 0.089 0.617 0.081 0.108 0.098 73 P 0.002 0.001 0.038 0.906 0.011 0.019 0.025 74 F 0.006 0.003 0.011 0.952 0.005 0.011 0.012 75 W 0.004 0.001 0.004 0.980 0.001 0.006 0.003 76 L 0.005 0.001 0.005 0.980 0.002 0.006 0.002 77 E 0.006 0.001 0.007 0.965 0.002 0.015 0.004 78 M 0.009 0.001 0.019 0.927 0.005 0.022 0.016 79 L 0.009 0.001 0.031 0.922 0.008 0.019 0.009 80 E 0.013 0.001 0.042 0.875 0.007 0.053 0.009 81 L 0.014 0.002 0.063 0.771 0.024 0.097 0.030 82 R 0.024 0.016 0.071 0.509 0.073 0.224 0.084 83 N 0.024 0.011 0.067 0.224 0.085 0.438 0.153 84 L 0.041 0.011 0.068 0.172 0.144 0.185 0.379 85 T 0.054 0.022 0.056 0.127 0.146 0.180 0.416 86 N 0.049 0.024 0.085 0.098 0.165 0.278 0.300 87 H 0.066 0.016 0.115 0.101 0.225 0.195 0.282 88 T 0.054 0.034 0.100 0.116 0.176 0.243 0.276 89 Y 0.026 0.049 0.025 0.069 0.275 0.136 0.419 90 D 0.006 0.013 0.008 0.099 0.168 0.018 0.688 91 E 0.001 0.001 0.007 0.988 0.001 0.004 0.001 92 A 0.001 0.001 0.005 0.992 0.001 0.002 0.001 93 L 0.001 0.001 0.005 0.993 0.001 0.002 0.001 94 A 0.001 0.001 0.001 0.998 0.001 0.001 0.001 95 E 0.001 0.001 0.001 0.998 0.001 0.001 0.001 96 R 0.001 0.001 0.001 0.997 0.001 0.003 0.001 97 I 0.001 0.001 0.001 0.992 0.001 0.006 0.001 98 Y 0.001 0.001 0.007 0.981 0.001 0.012 0.001 99 A 0.001 0.001 0.008 0.902 0.001 0.089 0.001 100 E 0.001 0.001 0.010 0.817 0.003 0.166 0.004 101 L 0.001 0.001 0.010 0.583 0.154 0.035 0.217 102 P 0.001 0.001 0.080 0.802 0.009 0.060 0.047 103 K 0.001 0.001 0.148 0.691 0.009 0.147 0.004 104 A 0.001 0.001 0.109 0.723 0.008 0.146 0.013 105 L 0.001 0.001 0.029 0.921 0.011 0.018 0.019 106 E 0.001 0.001 0.010 0.965 0.003 0.016 0.004 107 R 0.001 0.001 0.008 0.961 0.003 0.024 0.004 108 F 0.001 0.001 0.003 0.988 0.001 0.007 0.002 109 Q 0.001 0.001 0.002 0.996 0.001 0.002 0.001 110 E 0.001 0.001 0.002 0.995 0.001 0.003 0.001 111 L 0.001 0.001 0.003 0.990 0.001 0.006 0.001 112 L 0.001 0.001 0.004 0.992 0.001 0.003 0.001 113 R 0.001 0.001 0.008 0.971 0.001 0.019 0.001 114 R 0.001 0.001 0.007 0.926 0.003 0.058 0.005 115 L 0.003 0.002 0.005 0.822 0.029 0.098 0.041 116 E 0.012 0.021 0.014 0.212 0.151 0.307 0.282 117 E 0.009 0.004 0.010 0.023 0.372 0.079 0.501 118 P 0.003 0.002 0.001 0.004 0.024 0.011 0.955 119 A 0.001 0.001 0.001 0.001 0.001 0.001 0.999