# TARGET T0277 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0277.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 12.5384 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.837 0.018 0.040 0.078 0.004 0.012 0.004 0.001 0.003 0.001 0.001 2 A 0.965 0.002 0.007 0.019 0.001 0.001 0.003 0.001 0.001 0.001 0.001 3 S 0.885 0.005 0.012 0.067 0.003 0.013 0.002 0.001 0.009 0.001 0.001 4 L 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 5 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 6 R 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 7 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 8 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 9 E 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 10 R 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 11 L 0.979 0.001 0.001 0.020 0.001 0.001 0.001 0.001 0.001 0.001 0.001 12 K 0.993 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 A 0.974 0.001 0.002 0.021 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 A 0.812 0.003 0.012 0.167 0.002 0.001 0.001 0.001 0.001 0.001 0.001 15 L 0.728 0.022 0.083 0.133 0.005 0.011 0.008 0.003 0.006 0.001 0.001 16 E 0.439 0.048 0.119 0.311 0.007 0.033 0.024 0.005 0.012 0.002 0.001 17 R 0.067 0.124 0.579 0.009 0.010 0.029 0.013 0.001 0.165 0.002 0.001 18 P 0.222 0.006 0.685 0.012 0.001 0.026 0.002 0.001 0.002 0.001 0.044 19 K 0.503 0.054 0.156 0.179 0.018 0.027 0.025 0.019 0.008 0.009 0.001 20 D 0.269 0.111 0.247 0.129 0.042 0.080 0.059 0.012 0.046 0.005 0.001 21 E 0.830 0.023 0.053 0.065 0.006 0.012 0.005 0.002 0.004 0.001 0.001 22 F 0.878 0.029 0.033 0.041 0.004 0.009 0.001 0.001 0.003 0.001 0.001 23 I 0.840 0.049 0.020 0.067 0.005 0.009 0.001 0.001 0.007 0.001 0.001 24 R 0.850 0.046 0.061 0.014 0.006 0.012 0.004 0.001 0.005 0.001 0.001 25 D 0.917 0.013 0.023 0.027 0.003 0.008 0.004 0.002 0.001 0.001 0.001 26 S 0.922 0.018 0.012 0.023 0.011 0.002 0.005 0.004 0.001 0.001 0.001 27 A 0.952 0.014 0.007 0.021 0.002 0.002 0.001 0.001 0.001 0.001 0.001 28 I 0.955 0.020 0.010 0.009 0.001 0.003 0.001 0.001 0.001 0.001 0.001 29 Q 0.985 0.001 0.001 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 30 R 0.943 0.017 0.005 0.027 0.003 0.001 0.002 0.001 0.001 0.001 0.001 31 F 0.965 0.013 0.005 0.010 0.002 0.002 0.001 0.001 0.001 0.001 0.001 32 E 0.988 0.005 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 33 F 0.996 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 34 T 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 35 F 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 36 E 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 37 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 38 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 W 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 K 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 41 T 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 42 L 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 43 K 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 44 T 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 45 F 0.993 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 46 L 0.977 0.001 0.001 0.020 0.001 0.001 0.001 0.001 0.001 0.001 0.001 47 E 0.980 0.002 0.003 0.012 0.001 0.001 0.002 0.001 0.001 0.001 0.001 48 L 0.908 0.013 0.012 0.057 0.002 0.004 0.002 0.001 0.003 0.001 0.001 49 Q 0.219 0.014 0.021 0.728 0.003 0.002 0.006 0.001 0.006 0.001 0.001 50 G 0.021 0.001 0.010 0.008 0.011 0.002 0.251 0.619 0.002 0.076 0.001 51 L 0.334 0.186 0.280 0.126 0.032 0.027 0.003 0.001 0.007 0.002 0.001 52 E 0.233 0.124 0.213 0.196 0.078 0.069 0.041 0.011 0.025 0.009 0.001 53 A 0.456 0.144 0.181 0.126 0.042 0.031 0.006 0.003 0.010 0.002 0.001 54 R 0.430 0.081 0.070 0.370 0.014 0.017 0.005 0.002 0.010 0.001 0.001 55 S 0.069 0.211 0.345 0.008 0.189 0.014 0.019 0.002 0.120 0.023 0.001 56 P 0.651 0.003 0.216 0.030 0.001 0.034 0.001 0.001 0.002 0.001 0.061 57 R 0.912 0.009 0.028 0.034 0.004 0.003 0.003 0.004 0.002 0.002 0.001 58 A 0.941 0.002 0.009 0.034 0.002 0.003 0.005 0.003 0.001 0.001 0.001 59 A 0.973 0.002 0.004 0.017 0.001 0.001 0.001 0.001 0.001 0.001 0.001 60 I 0.984 0.002 0.003 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 61 R 0.994 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 62 G 0.995 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 63 A 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 64 F 0.990 0.002 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 65 Q 0.975 0.004 0.003 0.016 0.001 0.001 0.001 0.001 0.001 0.001 0.001 66 V 0.417 0.009 0.010 0.559 0.002 0.001 0.001 0.001 0.002 0.001 0.001 67 G 0.116 0.004 0.016 0.026 0.015 0.004 0.475 0.318 0.006 0.019 0.001 68 L 0.331 0.113 0.193 0.272 0.015 0.053 0.011 0.002 0.007 0.002 0.001 69 L 0.050 0.224 0.390 0.015 0.034 0.084 0.021 0.001 0.179 0.002 0.001 70 P 0.474 0.004 0.407 0.061 0.002 0.029 0.001 0.001 0.001 0.003 0.016 71 E 0.251 0.102 0.089 0.393 0.067 0.027 0.028 0.017 0.021 0.004 0.001 72 D 0.274 0.195 0.274 0.054 0.068 0.036 0.017 0.006 0.061 0.014 0.001 73 P 0.827 0.011 0.096 0.040 0.003 0.014 0.003 0.003 0.001 0.001 0.002 74 F 0.861 0.029 0.031 0.046 0.013 0.006 0.003 0.004 0.004 0.002 0.001 75 W 0.935 0.014 0.011 0.028 0.003 0.006 0.001 0.001 0.002 0.001 0.001 76 L 0.959 0.014 0.007 0.012 0.001 0.004 0.001 0.001 0.001 0.001 0.001 77 E 0.943 0.013 0.012 0.022 0.003 0.005 0.002 0.001 0.001 0.001 0.001 78 M 0.929 0.006 0.004 0.047 0.002 0.003 0.003 0.001 0.004 0.001 0.001 79 L 0.918 0.013 0.015 0.043 0.002 0.005 0.002 0.001 0.002 0.001 0.001 80 E 0.937 0.009 0.013 0.025 0.004 0.003 0.006 0.001 0.001 0.001 0.001 81 L 0.627 0.016 0.021 0.307 0.006 0.008 0.007 0.003 0.004 0.001 0.001 82 R 0.598 0.058 0.062 0.216 0.011 0.013 0.029 0.004 0.008 0.001 0.001 83 N 0.239 0.049 0.084 0.222 0.021 0.113 0.186 0.013 0.070 0.004 0.001 84 L 0.413 0.088 0.116 0.255 0.022 0.040 0.039 0.009 0.015 0.002 0.001 85 T 0.505 0.136 0.102 0.194 0.024 0.017 0.009 0.003 0.008 0.003 0.001 86 N 0.339 0.134 0.103 0.262 0.055 0.027 0.034 0.014 0.027 0.004 0.001 87 H 0.198 0.208 0.194 0.100 0.094 0.055 0.076 0.016 0.046 0.014 0.001 88 T 0.392 0.175 0.206 0.139 0.031 0.029 0.008 0.003 0.010 0.005 0.002 89 Y 0.241 0.166 0.276 0.121 0.122 0.034 0.016 0.005 0.010 0.008 0.001 90 D 0.058 0.042 0.287 0.024 0.024 0.335 0.008 0.001 0.214 0.006 0.002 91 E 0.988 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 92 A 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 93 L 0.985 0.001 0.001 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 94 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 95 E 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 96 R 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 97 I 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 98 Y 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 99 A 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 100 E 0.443 0.001 0.001 0.555 0.001 0.001 0.001 0.001 0.001 0.001 0.001 101 L 0.496 0.016 0.210 0.041 0.001 0.026 0.010 0.003 0.195 0.002 0.001 102 P 0.959 0.001 0.028 0.007 0.001 0.002 0.001 0.001 0.001 0.001 0.001 103 K 0.952 0.001 0.004 0.033 0.001 0.001 0.003 0.006 0.001 0.001 0.001 104 A 0.927 0.001 0.003 0.064 0.001 0.002 0.001 0.001 0.001 0.001 0.001 105 L 0.992 0.001 0.002 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 106 E 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 107 R 0.986 0.001 0.001 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 108 F 0.989 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 109 Q 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 110 E 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 111 L 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 112 L 0.994 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 113 R 0.990 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 114 R 0.887 0.001 0.004 0.106 0.001 0.001 0.001 0.001 0.001 0.001 0.001 115 L 0.376 0.022 0.058 0.522 0.004 0.006 0.004 0.002 0.006 0.001 0.001 116 E 0.175 0.039 0.077 0.196 0.012 0.084 0.379 0.008 0.026 0.005 0.001 117 E 0.033 0.373 0.427 0.007 0.025 0.021 0.005 0.001 0.107 0.001 0.001 118 P 0.108 0.010 0.785 0.013 0.001 0.055 0.001 0.001 0.003 0.001 0.023 119 A 0.237 0.141 0.266 0.080 0.087 0.034 0.055 0.055 0.021 0.023 0.001