# List of top-scoring protein chains for T0277.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jogA 146 5.46e-16 a.24.16.2 77142 1g55A 343 7.54e-01 1g55A c.66.1.26 34247 1g60A 260 2.62e+00 c.66.1.11 70151 1k6wA 426 3.88e+00 b.92.1.2 68236 c.1.9.5 68237 1kcrH 218 3.96e+00 b.1.1.1 72303 b.1.1.2 72304 1emuA 132 4.03e+00 1agrE a.91.1.1 18549 1uok 558 4.06e+00 1uok b.71.1.1 27801 c.1.8.1 28788 1dk8A 147 4.17e+00 1agrE a.91.1.1 18548 1s1hL 118 4.65e+00 1s07A 429 4.77e+00 c.67.1.4 -8195 1s08A 429 6.01e+00 c.67.1.4 -8197 1s09A 429 6.03e+00 c.67.1.4 -8199 1qj5A 429 6.03e+00 1dtyA c.67.1.4 34493 1s0aA 429 6.04e+00 c.67.1.4 -8201 1mgvA 429 6.05e+00 c.67.1.4 79107 1dtyA 429 6.08e+00 1dtyA c.67.1.4 34495 1jv5B 117 7.00e+00 b.1.1.1 67345 1e4xI 217 7.04e+00 b.1.1.1 59238 b.1.1.2 59239 1e4wH 213 8.27e+00 1igtB b.1.1.1 59232 b.1.1.2 59233 1s06A 429 8.29e+00 c.67.1.4 -8193 1e4xH 217 8.35e+00 1igtB b.1.1.1 59236 b.1.1.2 59237 1qfwH 117 8.83e+00 1gc1H b.1.1.1 20435 1jhlH 116 9.72e+00 1mfa b.1.1.1 19967 1i3gH 121 1.09e+01 b.1.1.1 66018 1lf1A 308 1.11e+01 c.1.8.3 73877 1a3h 300 1.18e+01 7a3hA c.1.8.3 28819 1h5vA 304 1.18e+01 c.1.8.3 70898 1qi2A 305 1.19e+01 7a3hA c.1.8.3 28824 7a3hA 303 1.19e+01 7a3hA c.1.8.3 28817 1buoA 121 1.20e+01 1buoA d.42.1.1 38631 1jae 471 1.29e+01 1smd b.71.1.1 27773 c.1.8.1 28760 1qfuH 223 1.32e+01 1igtB b.1.1.1 20293 b.1.1.2 21285 1mreH 215 1.33e+01 1mfa b.1.1.1 20019 b.1.1.2 21073 1q20A 299 1.37e+01 c.37.1.5 -7033 1q1qA 350 1.38e+01 c.37.1.5 -7029 1viwA 471 1.46e+01 1smd b.71.1.1 27776 c.1.8.1 28763 1j6oA 268 1.52e+01 c.1.9.12 77088 1iqwH 230 1.62e+01 b.1.1.1 66277 b.1.1.2 66278 1i50B 1224 1.67e+01 e.29.1.1 61755 1emn 82 1.68e+01 1emn g.3.11.1 44322 g.3.11.1 44323 1rvfH 119 1.81e+01 1mfa b.1.1.1 19991 1oaqH 121 1.95e+01 b.1.1.1 -2287 1oauH 122 1.96e+01 b.1.1.1 -2292 1rurH 218 2.00e+01 b.1.1.1 -2259 b.1.1.2 -2529 1m53A 570 2.03e+01 b.71.1.1 84805 c.1.8.1 84806 1a6vH 120 2.06e+01 1mfa b.1.1.1 20257 1ksyA 154 2.10e+01 d.89.1.2 72948 1ncwH 222 2.11e+01 b.1.1.1 85555 b.1.1.2 85556 1glqA 209 2.13e+01 1pgtA a.45.1.1 17588 c.47.1.5 32882 1f08A 148 2.17e+01 1f08A d.89.1.2 59564 1oayH 122 2.20e+01 b.1.1.1 -2300 1bwnA 169 2.24e+01 1btkA b.55.1.1 26961 1mieH 228 2.24e+01 b.1.1.1 -2240 b.1.1.2 -2490 1btkA 169 2.27e+01 1btkA b.55.1.1 26959 1ruaH 222 2.29e+01 b.1.1.1 -2277 b.1.1.2 -2523 1forH 219 2.31e+01 1igtB b.1.1.1 19989 b.1.1.2 21045 1b55A 169 2.32e+01 1btkA b.55.1.1 26963 1h5yA 253 2.37e+01 c.1.2.1 65638 1ngqH 222 2.38e+01 1igtB b.1.1.1 20093 b.1.1.2 21125 1h8nA 252 2.43e+01 1mfa b.1.1.1 60783 b.1.1.1 60784 1h8sA 252 2.45e+01 b.1.1.1 60789 b.1.1.1 60790 1ubeA 349 2.52e+01 c.37.1.11 88412 d.48.1.1 88413 1ig9A 903 2.65e+01 1clqA c.55.3.5 62367 e.8.1.1 62368 1q9yA 906 2.66e+01 c.55.3.5 -7640 e.8.1.1 -11890 1mh5B 230 2.66e+01 b.1.1.1 -2238 b.1.1.2 -2488 1mb3A 124 2.68e+01 c.23.1.1 78907 1h4vB 421 2.69e+01 1adjA c.51.1.1 60624 d.104.1.1 60625 1jd7A 453 2.71e+01 b.71.1.1 77104 c.1.8.1 77105 1mj8H 230 2.76e+01 b.1.1.1 -2242 b.1.1.2 -2492 1kxhA 448 2.76e+01 b.71.1.1 73151 c.1.8.1 73152 1g94A 448 2.77e+01 b.71.1.1 65169 c.1.8.1 65170 1aqm 453 2.78e+01 1smd b.71.1.1 27717 c.1.8.1 28704 1ih7A 903 2.79e+01 1clqA c.55.3.5 62375 e.8.1.1 62376 1ghc 75 2.86e+01 1hstA a.4.5.13 16142 1pb8A 292 2.88e+01 c.94.1.1 88026 1pb7A 292 2.91e+01 c.94.1.1 88025 1mjuH 227 3.07e+01 b.1.1.1 -2245 b.1.1.2 -2495 1gkpA 458 3.10e+01 b.92.1.3 70231 c.1.9.6 70232 1ni7A 155 3.10e+01 d.224.1.1 85738 1bqlH 215 3.13e+01 1igtB b.1.1.1 19971 b.1.1.2 21029 1p8kZ 254 3.21e+01 d.95.2.1 -10648 d.95.2.1 -10649 1cicB 217 3.22e+01 1igtB b.1.1.1 19965 b.1.1.2 21025 1schA 294 3.23e+01 1bgp a.93.1.1 18685 1jd9A 453 3.27e+01 b.71.1.1 77106 c.1.8.1 77107 1onqA 283 3.30e+01 b.1.1.2 -2640 d.19.1.1 -9390 1rliA 184 3.37e+01 unknown_sccs -6438 2cro 71 3.41e+01 1r69 a.35.1.2 17038 1m6dA 214 3.44e+01 d.3.1.1 84849 1rap 108 3.44e+01 1ycc a.3.1.1 15858 2iffH 215 3.48e+01 1igtB b.1.1.1 19973 b.1.1.2 21031 1cs3A 116 3.48e+01 1buoA d.42.1.1 38632 1nfgA 457 3.51e+01 b.92.1.3 85632 c.1.9.6 85633 1d5bB 221 3.54e+01 8fabA b.1.1.1 20205 b.1.1.2 21221 1k6qH 216 3.55e+01 b.1.1.1 72092 b.1.1.2 72093 1j99A 293 3.69e+01 c.37.1.5 71618 1j9lA 247 3.73e+01 c.106.1.1 62762