# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jogA 146 1.53e-19 a.24.16.2 77142 1rx0A 393 9.59e-01 a.29.3.1 -742 e.6.1.1 -11858 1or7A 194 1.23e+00 a.4.13.2 87332 a.177.1.1 87333 1b8dA 164 1.53e+00 1cpcA a.1.1.3 15665 1s7zA 117 2.14e+00 unknown_sccs -344 1aua 296 2.92e+00 1aua a.5.3.1 16290 c.13.1.1 30882 1cxc 124 3.12e+00 1ycc a.3.1.1 15890 1dk8A 147 3.52e+00 1agrE a.91.1.1 18548 1buoA 121 3.56e+00 1buoA d.42.1.1 38631 1h16A 759 3.85e+00 c.7.1.1 76462 1cm5A 759 3.89e+00 1cm5A c.7.1.1 30671 1rktA 205 4.20e+00 a.4.1.9 -210 a.121.1.1 -1663 2cxbA 124 4.22e+00 1ycc a.3.1.1 15891 1i50B 1224 4.71e+00 e.29.1.1 61755 1qmyA 167 4.89e+00 1qmyA d.3.1.2 37094 1dwkA 156 4.94e+00 1dw9A a.35.1.4 17075 d.72.1.1 39606 1no7A 604 5.46e+00 unknown_sccs -12043 1i39A 225 5.50e+00 1ekeA c.55.3.1 61585 1icrA 217 6.34e+00 1vfrA d.90.1.1 62274 1js8A 394 6.67e+00 a.86.1.1 67219 b.112.1.1 67220 2tct 207 6.76e+00 2tct a.4.1.9 16063 a.121.1.1 19240 1cxzB 86 6.76e+00 1cxzB a.2.6.1 15705 1mb3A 124 7.10e+00 c.23.1.1 78907 1mojA 182 7.58e+00 a.25.1.1 -669 1qgrA 876 8.24e+00 1qgrA a.118.1.1 19119 1dat 174 8.38e+00 2fha a.25.1.1 16677 1qq7A 253 8.65e+00 1qq5A c.108.1.1 43329 1qq5A 253 8.67e+00 1qq5A c.108.1.1 43327 1fpoA 171 8.83e+00 1fpoA a.2.3.1 15693 a.23.1.1 16487 2a0b 125 8.95e+00 2a0b a.24.10.1 16630 3lynA 136 9.31e+00 1lis a.19.1.1 16413 1uqvA 85 1.16e+01 a.60.1.2 -1010 1l3lA 234 1.26e+01 a.4.6.2 73541 d.110.5.1 73542 1o3uA 135 1.35e+01 a.24.16.3 86615 1bhdA 118 1.37e+01 1bkrA a.40.1.1 17398 1jipA 403 1.42e+01 a.104.1.1 66748 1fjgD 209 1.62e+01 1c05A d.66.1.2 39553 1ee4A 423 1.68e+01 1ee4A a.118.1.1 19128 1g60A 260 1.73e+01 c.66.1.11 70151 1k4nA 192 1.75e+01 d.32.1.5 72059 1q0gA 117 1.86e+01 1dcs 311 1.91e+01 1dcs b.82.2.1 28124 1i8jA 323 1.95e+01 1b4kA c.1.10.3 61968 1m1nA 491 2.08e+01 c.92.2.3 78417 1nznA 126 2.16e+01 a.118.8.1 -1616 1ibrB 462 2.17e+01 1qgrA a.118.1.1 19120 1fmjA 351 2.19e+01 c.37.1.5 59879 1l6sA 323 2.19e+01 c.1.10.3 73627 1cjcA 460 2.36e+01 1cjcA c.3.1.1 30319 c.4.1.1 30604 1pa7A 130 2.39e+01 a.40.1.1 -896 1knzA 164 2.44e+01 e.34.1.1 68709 1iw7C 1119 2.50e+01 e.29.1.1 71474 1ib3A 349 2.53e+01 1ib2A 1q08A 99 2.59e+01 a.6.1.3 -381 1c02A 166 2.59e+01 1qspA a.24.10.2 16633 1i36A 264 2.62e+01 a.100.1.8 71108 c.2.1.6 71109 1sqgA 429 2.69e+01 1gxyA 226 2.75e+01 d.166.1.3 76380 1miwA 404 2.78e+01 a.173.1.1 79162 d.218.1.4 79163 1a76 326 2.83e+01 1a76 a.60.7.1 18091 c.120.1.2 33361 1rxqA 178 2.86e+01 1qqfA 277 2.87e+01 1c3d a.102.4.4 18875 1ks9A 291 3.04e+01 a.100.1.7 68857 c.2.1.6 68858 1uzbA 516 3.22e+01 c.82.1.1 -8552 1jdhA 529 3.22e+01 a.118.1.1 66549 1hvvA 75 3.26e+01 1hvvA h.1.15.1 45639 1r8iA 213 3.27e+01 unknown_sccs -411 1m6kA 251 3.31e+01 e.3.1.1 78695 1vhnA 318 3.32e+01 c.1.4.1 -5209 1i58A 189 3.33e+01 1b3qA d.122.1.3 61773 1t6uA 117 3.35e+01 1ib2A 349 3.41e+01 1ib2A a.118.1.8 62141 1chkA 238 3.43e+01 1chkA d.2.1.7 36999 2gdm 153 3.44e+01 2gdm a.1.1.2 15212 1ockA 412 3.44e+01 c.117.1.1 86802 2igd 61 3.63e+01 2igd d.15.7.1 37821 1e6yB 433 3.71e+01 1mroB a.89.1.1 18535 d.58.31.2 39453 1f74A 293 3.77e+01 1nal3 c.1.10.1 29079 1g03A 134 3.79e+01 1qrjB a.73.1.1 60162 1sqsA 242 3.79e+01 unknown_sccs -6433 1au1A 166 3.81e+01 1ifa a.26.1.3 16889 1v4vA 376 3.82e+01 c.87.1.3 -8583 1qgtA 149 3.84e+01 1qgtA a.62.1.1 18135 1o5hA 214 3.91e+01 unknown_sccs -1078 1hf8A 289 3.97e+01 1hg5A unknown_sccs -399 unknown_sccs -1628