# List of top-scoring protein chains for t04-100-30-near-backbone-11 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jogA 146 3.95e-17 a.24.16.2 77142 1s0aA 429 1.02e+00 c.67.1.4 -8201 1cxc 124 1.20e+00 1ycc a.3.1.1 15890 2cxbA 124 1.28e+00 1ycc a.3.1.1 15891 1qj5A 429 1.42e+00 1dtyA c.67.1.4 34493 1jnyA 435 2.40e+00 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1i58A 189 2.41e+00 1b3qA d.122.1.3 61773 1g55A 343 2.45e+00 1g55A c.66.1.26 34247 1mb3A 124 3.16e+00 c.23.1.1 78907 1nznA 126 3.38e+00 a.118.8.1 -1616 1a0p 290 3.69e+00 1a0p a.60.9.1 18105 d.163.1.1 42165 2hvm 273 3.74e+00 1cnv c.1.8.5 28985 1k6wA 426 7.89e+00 b.92.1.2 68236 c.1.9.5 68237 1s7zA 117 8.38e+00 unknown_sccs -344 1jae 471 9.25e+00 1smd b.71.1.1 27773 c.1.8.1 28760 1j6wA 175 9.71e+00 1j98A d.185.1.2 62663 1brwA 433 9.88e+00 1brwA a.46.2.1 17764 c.27.1.1 31628 d.41.3.1 38626 1jipA 403 1.00e+01 a.104.1.1 66748 1dk8A 147 1.02e+01 1agrE a.91.1.1 18548 1dfmA 223 1.16e+01 1d2iA c.52.1.5 33295 1ubeA 349 1.22e+01 c.37.1.11 88412 d.48.1.1 88413 1k4nA 192 1.25e+01 d.32.1.5 72059 1tmy 120 1.29e+01 1dbwA c.23.1.1 31083 1j9lA 247 1.32e+01 c.106.1.1 62762 1iw7C 1119 1.46e+01 e.29.1.1 71474 1r5pA 108 1.46e+01 unknown_sccs -7487 1kl7A 514 1.50e+01 c.79.1.1 72678 1e6yB 433 1.74e+01 1mroB a.89.1.1 18535 d.58.31.2 39453 1acc 735 1.85e+01 1acc f.11.1.1 43828 1vls 146 1.92e+01 1vls a.24.2.1 16532 7a3hA 303 1.94e+01 7a3hA c.1.8.3 28817 1ihgA 370 2.10e+01 2cpl a.118.8.1 62380 b.62.1.1 62381 1r5lA 262 2.11e+01 a.5.3.1 -360 c.13.1.1 -6215 1nnwA 252 2.11e+01 d.159.1.5 80674 1jvsA 400 2.13e+01 a.69.3.1 77187 c.2.1.3 77188 d.81.1.3 77189 1eupA 403 2.22e+01 1rom a.104.1.1 18967 1s0uA 408 2.52e+01 b.43.3.1 -4053 b.44.1.1 -4061 c.37.1.8 -7096 1vhnA 318 2.53e+01 c.1.4.1 -5209 1ej0A 180 2.74e+01 1ej0A c.66.1.2 34179 1kqzA 273 2.90e+01 c.1.8.5 68844 1d6jA 211 2.95e+01 1d6jA c.37.1.4 31940 1fpoA 171 3.03e+01 1fpoA a.2.3.1 15693 a.23.1.1 16487 2igd 61 3.05e+01 2igd d.15.7.1 37821 2reb 352 3.06e+01 2reb c.37.1.11 32282 d.48.1.1 38767 1kdgA 546 3.19e+01 c.3.1.2 77337 d.16.1.1 77338 1tqnA 486 3.22e+01 1c02A 166 3.24e+01 1qspA a.24.10.2 16633 1aua 296 3.37e+01 1aua a.5.3.1 16290 c.13.1.1 30882 1rx0A 393 3.55e+01 a.29.3.1 -742 e.6.1.1 -11858 1f6fA 199 3.57e+01 1f6fA a.26.1.1 16839 1i50B 1224 3.60e+01 e.29.1.1 61755 1r9wA 145 3.61e+01 d.89.1.2 -10511 1auoA 218 3.67e+01 1auoA c.69.1.14 34716 1o3uA 135 3.74e+01 a.24.16.3 86615 1om0A 274 3.78e+01 c.1.8.5 87058 1q1aA 289 3.82e+01 c.31.1.5 -6781 1g60A 260 3.84e+01 c.66.1.11 70151 1g73A 162 3.84e+01 1fewA a.7.4.1 16332 1q0qA 406 3.95e+01