# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jogA 146 1.64e-21 a.24.16.2 77142 1ah7 245 2.99e-01 1ah7 a.124.1.1 19339 1or7A 194 6.42e-01 a.4.13.2 87332 a.177.1.1 87333 1b8dA 164 1.02e+00 1cpcA a.1.1.3 15665 1aua 296 1.19e+00 1aua a.5.3.1 16290 c.13.1.1 30882 1rx0A 393 1.31e+00 a.29.3.1 -742 e.6.1.1 -11858 1dk8A 147 1.42e+00 1agrE a.91.1.1 18548 2cxbA 124 2.05e+00 1ycc a.3.1.1 15891 1cxc 124 2.16e+00 1ycc a.3.1.1 15890 1i39A 225 2.32e+00 1ekeA c.55.3.1 61585 1g55A 343 2.79e+00 1g55A c.66.1.26 34247 1cxzB 86 3.03e+00 1cxzB a.2.6.1 15705 1buoA 121 3.14e+00 1buoA d.42.1.1 38631 1k6wA 426 3.75e+00 b.92.1.2 68236 c.1.9.5 68237 1js8A 394 4.01e+00 a.86.1.1 67219 b.112.1.1 67220 1fpoA 171 4.05e+00 1fpoA a.2.3.1 15693 a.23.1.1 16487 1i50B 1224 4.52e+00 e.29.1.1 61755 2tct 207 5.42e+00 2tct a.4.1.9 16063 a.121.1.1 19240 1mb3A 124 5.47e+00 c.23.1.1 78907 1icrA 217 5.47e+00 1vfrA d.90.1.1 62274 1h16A 759 6.70e+00 c.7.1.1 76462 1mojA 182 7.95e+00 a.25.1.1 -669 1dwkA 156 8.24e+00 1dw9A a.35.1.4 17075 d.72.1.1 39606 1s7zA 117 9.04e+00 unknown_sccs -344 1g03A 134 9.74e+00 1qrjB a.73.1.1 60162 1dat 174 9.78e+00 2fha a.25.1.1 16677 1m6kA 251 9.89e+00 e.3.1.1 78695 1qh8A 478 1.01e+01 1qguA c.92.2.3 35633 1l3lA 234 1.04e+01 a.4.6.2 73541 d.110.5.1 73542 1qq5A 253 1.11e+01 1qq5A c.108.1.1 43327 1no7A 604 1.12e+01 unknown_sccs -12043 1nznA 126 1.20e+01 a.118.8.1 -1616 1i58A 189 1.24e+01 1b3qA d.122.1.3 61773 2a0b 125 1.26e+01 2a0b a.24.10.1 16630 1p4oA 322 1.26e+01 d.144.1.7 87775 1p9bA 442 1.28e+01 c.37.1.10 -7115 1fjgD 209 1.31e+01 1c05A d.66.1.2 39553 1cm5A 759 1.36e+01 1cm5A c.7.1.1 30671 1qq7A 253 1.43e+01 1qq5A c.108.1.1 43329 1bhdA 118 1.50e+01 1bkrA a.40.1.1 17398 1k4nA 192 1.70e+01 d.32.1.5 72059 1cg5A 141 1.78e+01 1abwA a.1.1.2 15406 1h6pA 203 1.84e+01 a.146.1.1 60690 1deeG 54 1.85e+01 1fc2C a.8.1.1 16343 1a32 88 1.88e+01 1a32 a.16.1.2 16384 1r8iA 213 1.92e+01 unknown_sccs -411 7a3hA 303 1.97e+01 7a3hA c.1.8.3 28817 1ockA 412 2.00e+01 c.117.1.1 86802 1teaA 299 2.06e+01 4crxA 322 2.07e+01 4crxA a.60.9.1 18095 d.163.1.1 42155 1n1fA 159 2.07e+01 a.26.1.3 79803 1rxqA 178 2.12e+01 3lynA 136 2.14e+01 1lis a.19.1.1 16413 1jboA 162 2.19e+01 a.1.1.3 84150 1ibrB 462 2.27e+01 1qgrA a.118.1.1 19120 1g94A 448 2.28e+01 b.71.1.1 65169 c.1.8.1 65170 1g60A 260 2.42e+01 c.66.1.11 70151 1csn 298 2.47e+01 1csn d.144.1.7 41664 1q08A 99 2.47e+01 a.6.1.3 -381 1rktA 205 2.48e+01 a.4.1.9 -210 a.121.1.1 -1663 1e6yB 433 2.53e+01 1mroB a.89.1.1 18535 d.58.31.2 39453 1i8jA 323 2.56e+01 1b4kA c.1.10.3 61968 1fmjA 351 2.56e+01 c.37.1.5 59879 1q5zA 177 2.60e+01 unknown_sccs -1215 1vhnA 318 2.61e+01 c.1.4.1 -5209 1t7pA 698 2.66e+01 1t7pA c.55.3.5 33712 e.8.1.1 43005 1sqsA 242 2.74e+01 unknown_sccs -6433 1qmyA 167 2.75e+01 1qmyA d.3.1.2 37094 1qgtA 149 2.75e+01 1qgtA a.62.1.1 18135 1d1qA 161 2.76e+01 1dg9A c.44.1.1 32642 1v4vA 376 2.79e+01 c.87.1.3 -8583 1uqvA 85 2.84e+01 a.60.1.2 -1010 1oj7A 408 2.88e+01 1l6sA 323 2.92e+01 c.1.10.3 73627 1kn1B 161 2.93e+01 a.1.1.3 77456 1b0b 142 2.94e+01 2fal a.1.1.2 15010 1rkeA 262 2.95e+01 a.24.9.1 -582 a.24.9.1 -583 1o98A 511 2.97e+01 c.105.1.1 86684 c.76.1.3 86685 1dcs 311 3.00e+01 1dcs b.82.2.1 28124 1eqjA 511 3.00e+01 1ejjA c.105.1.1 59495 c.76.1.3 59496 1f44A 324 3.02e+01 a.60.9.1 64982 d.163.1.1 64983 1anv 356 3.04e+01 1anv a.54.1.1 17890 g.51.1.1 45365 g.51.1.1 45371 1gxyA 226 3.07e+01 d.166.1.3 76380 1q1aA 289 3.25e+01 c.31.1.5 -6781 1t7sA 137 3.26e+01 2fokA 579 3.34e+01 2fokA a.4.5.12 16131 a.4.5.12 16132 a.4.5.12 16133 c.52.1.12 33323 1rlr 761 3.37e+01 1rlr a.98.1.1 18753 c.7.1.2 30679 2igd 61 3.40e+01 2igd d.15.7.1 37821 1hrkA 359 3.48e+01 1hrkA c.92.1.1 61228 1s9aA 257 3.50e+01 1pa7A 130 3.52e+01 a.40.1.1 -896 2gdm 153 3.52e+01 2gdm a.1.1.2 15212 1ks9A 291 3.54e+01 a.100.1.7 68857 c.2.1.6 68858 1amf 233 3.57e+01 1wod c.94.1.1 35833 1q7bA 244 3.59e+01 c.2.1.2 -5826 1jigA 146 3.59e+01 a.25.1.1 71685 1k92A 455 3.63e+01 c.26.2.1 68325 d.210.1.1 68326 1jj2L 194 3.66e+01 1ffkI d.12.1.2 63097 1w2wA 211 3.66e+01 2occE 109 3.68e+01 2occE a.118.11.1 19224 1au1A 166 3.69e+01 1ifa a.26.1.3 16889 1nu7D 282 3.72e+01 unknown_sccs -433 unknown_sccs -434 2sqcA 631 3.74e+01 2sqcA a.102.4.2 18854 a.102.4.2 18855 1lis 136 3.76e+01 1lis a.19.1.1 16406 2lisA 136 3.76e+01 1lis a.19.1.1 16405 1hyeA 313 3.77e+01 2cmd c.2.1.5 61400 d.162.1.1 61401 1q6hA 224 3.80e+01 d.26.1.1 -9487 1m1nA 491 3.80e+01 c.92.2.3 78417 1q0qA 406 3.83e+01 1n3kA 130 3.86e+01 a.77.1.4 79965 1ui8A 638 3.97e+01 b.30.2.1 -3525 d.17.2.1 -9272 d.17.2.1 -9273 1wod 233 3.98e+01 1wod c.94.1.1 35832