# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1jogA	146	4.97e-19		a.24.16.2	77142
1g55A	343	4.01e-01	1g55A	c.66.1.26	34247
1i50B	1224	6.33e-01		e.29.1.1	61755
2gdm	153	4.27e+00	2gdm	a.1.1.2	15212
1dk8A	147	5.03e+00	1agrE	a.91.1.1	18548
1iyhA	198	5.60e+00		a.45.1.1	83790
				c.47.1.5	83791
1j9lA	247	7.82e+00		c.106.1.1	62762
1ubeA	349	8.50e+00		c.37.1.11	88412
				d.48.1.1	88413
1j6wA	175	9.25e+00	1j98A	d.185.1.2	62663
1ogoX	574	9.93e+00		unknown_sccs	-3237
				unknown_sccs	-4783
1pd21	199	1.18e+01	1pd21		
1o3uA	135	1.20e+01		a.24.16.3	86615
1tmy	120	1.35e+01	1dbwA	c.23.1.1	31083
1jbwA	428	1.45e+01		c.59.1.2	62860
				c.72.2.2	62861
1jnyA	435	1.46e+01		b.43.3.1	66982
				b.44.1.1	66983
				c.37.1.8	66984
1eupA	403	1.69e+01	1rom	a.104.1.1	18967
1e6yB	433	1.88e+01	1mroB	a.89.1.1	18535
				d.58.31.2	39453
1oj7A	408	1.93e+01			
2cxbA	124	1.94e+01	1ycc	a.3.1.1	15891
1a6wH	120	1.96e+01	1mfa	b.1.1.1	20253
1jipA	403	2.06e+01		a.104.1.1	66748
1jl2A	156	2.19e+01		c.55.3.1	66822
1r5pA	108	2.32e+01		unknown_sccs	-7487
2reb	352	2.39e+01	2reb	c.37.1.11	32282
				d.48.1.1	38767
1mb3A	124	2.51e+01		c.23.1.1	78907
1bec	238	2.73e+01	1bec	b.1.1.1	20627
				b.1.1.2	21561
1fmjA	351	2.86e+01		c.37.1.5	59879
1iqcA	308	2.92e+01		a.3.1.5	66266
				a.3.1.5	66267
1hw1A	239	2.94e+01	1e2xA	a.4.5.6	16111
				a.78.1.1	18441
1cxc	124	2.97e+01	1ycc	a.3.1.1	15890
1huxA	270	2.99e+01	1huxA	c.55.1.5	61278
1icrA	217	3.08e+01	1vfrA	d.90.1.1	62274
1fgs	428	3.08e+01	1fgs	c.59.1.2	33959
				c.72.2.2	34962
1m0uA	249	3.26e+01		a.45.1.1	78359
				c.47.1.5	78360
1yge	839	3.47e+01	1yge	a.119.1.1	19234
				b.12.1.1	23634
1o0uA	429	3.59e+01		c.118.1.1	80743
1miwA	404	3.69e+01		a.173.1.1	79162
				d.218.1.4	79163
1n00A	321	3.75e+01		a.65.1.1	85241
1qcsA	211	3.77e+01	1qcsA	b.52.2.3	26927
				d.31.1.1	38461
7a3hA	303	3.85e+01	7a3hA	c.1.8.3	28817
1ngvA	534	3.87e+01		c.111.1.2	85698
1im8A	244	3.95e+01		c.66.1.14	66212
1oaqH	121	3.99e+01		b.1.1.1	-2287