PFRMAT RR
TARGET T0277
AUTHOR 4204-4258-2837
REMARK From group SAM-TO4-hand under the direction of
REMARK Kevin Karplus.
REMARK Project by George Shackelford and Kevin Karplus
REMARK The value given is an approximation of the probability
REMARK as provided by the neural network.
REMARK The predictions are limited to a score >= .18 which
REMARK is an approximation of the probability.
REMARK
METHOD The predictor is an artificial neural network
METHOD using 280 inputs.
METHOD Input includes separation and sequence length, corrected
METHOD mutual information between columns (M. Cline) and 
METHOD an e-value measure of correlation between columns (K Karplus) 
METHOD NN: /projects/compbio/experiments/protein-predict/casp6/networks/NN280-240n300.net.28
METHOD Other inputs are from alignments and
METHOD secondary predictions from SAM-t2k and SAM-t04 of 
METHOD University of California, Santa Cruz
MODEL 1
MASLARAVERLKAALERPKDEFIRDSAIQRFEFTFELAWKTLKTFLELQG
LEARSPRAAIRGAFQVGLLPEDPFWLEMLELRNLTNHTYDEALAERIYAE
LPKALERFQELLRRLEEPA
80 116 0 8 0.5729
10 55 0 8 0.5066
27 105 0 8 0.2363
35 97 0 8 0.23035
34 97 0 8 0.22185
11 35 0 8 0.21675
11 34 0 8 0.1921
35 64 0 8 0.1904
78 97 0 8 0.1819
11 39 0 8 0.1819
END