# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1souA 194 3.39e-31 1ehiA 377 2.72e-02 1iow c.30.1.2 31716 d.142.1.1 41484 1sg1X 161 2.33e-01 1f5mB 180 1.66e+00 1f5mB d.110.2.1 40896 1f5mA 180 1.66e+00 1f5mB d.110.2.1 40895 1oxxK 353 1.76e+00 b.40.6.3 -3969 c.37.1.12 -7187 1oxsC 353 1.98e+00 b.40.6.3 87519 c.37.1.12 87520 1dqwA 267 2.88e+00 1dqwA c.1.2.3 28551 1f8xA 157 2.91e+00 1f8xA c.23.14.1 31397 1ltlA 279 3.07e+00 b.40.4.11 84701 1poiA 317 3.42e+00 1poiA unknown_sccs 34153 7aatA 401 3.80e+00 1ajsA c.67.1.1 34250 1ecfB 504 3.81e+00 1ecfB c.61.1.1 34054 d.153.1.1 41821 1ecfA 504 3.81e+00 1ecfB c.61.1.1 34053 d.153.1.1 41820 1qba 858 3.81e+00 1qba b.1.18.2 21810 b.2.2.3 22406 c.1.8.6 29009 d.92.2.1 40408 1fzaB 328 3.95e+00 3fib d.171.1.1 42480 h.1.8.1 45621 1f8yA 157 4.40e+00 1f8xA c.23.14.1 31395 1c7sA 858 5.04e+00 1qba b.1.18.2 21812 b.2.2.3 22408 c.1.8.6 29011 d.92.2.1 40410 1v84A 253 5.53e+00 1k2yX 463 5.84e+00 c.84.1.1 68063 c.84.1.1 68064 c.84.1.1 68065 d.129.2.1 68066 1jeyB 565 6.01e+00 1jeqB unknown_sccs -4431 unknown_sccs -7995 1hr6A 475 6.14e+00 1hr6A d.185.1.1 61164 d.185.1.1 61165 1to6A 371 6.16e+00 1koe 172 6.34e+00 1koe d.169.1.5 42448 1korA 400 6.37e+00 c.26.2.1 72824 d.210.1.1 72825 1p5dX 463 6.63e+00 c.84.1.1 -8554 c.84.1.1 -8555 c.84.1.1 -8556 d.129.2.1 -11029 1j4aA 333 6.64e+00 c.2.1.4 71502 c.23.12.1 71503 1usgA 346 6.77e+00 c.93.1.1 -8635 3chy 128 7.72e+00 3chy c.23.1.1 31038 1w2wB 191 7.78e+00 1lam 484 8.76e+00 1lam c.56.5.3 33829 c.50.1.1 33166 1bllE 488 8.90e+00 1lam c.56.5.3 33833 c.50.1.1 33170 1lap 488 8.90e+00 1lam c.56.5.3 33834 c.50.1.1 33171 1jeqB 565 9.17e+00 1jeqB unknown_sccs -4432 unknown_sccs -7996 2lbp 346 9.68e+00 2liv c.93.1.1 35709 1qunB 279 1.07e+01 b.2.3.2 22411 b.2.3.2 22412 1hgxA 183 1.19e+01 1tc1A c.61.1.1 34027 1v9fA 325 1.22e+01 1e6mA 128 1.26e+01 3chy c.23.1.1 31039 1bdmB 327 1.27e+01 1bmdA c.2.1.5 30138 d.162.1.1 42105 1tplA 426 1.32e+01 1ax4A c.67.1.2 34387 1vjnA 220 1.36e+01 unknown_sccs -11458 1guzA 310 1.39e+01 c.2.1.5 65586 d.162.1.1 65587 1jqaA 370 1.42e+01 e.22.1.2 67085 1rtwA 220 1.42e+01 unknown_sccs -1904 1vhtA 218 1.44e+01 c.37.1.1 -7004 1uetA 437 1.45e+01 unknown_sccs -1144 unknown_sccs -9798 unknown_sccs -10058 1hyhA 309 1.48e+01 1hyhA c.2.1.5 30150 d.162.1.1 42117 1kiuB 279 1.55e+01 b.2.3.2 72525 b.2.3.2 72526 1o75A 415 1.57e+01 b.1.20.1 81117 b.1.20.1 81118 b.120.1.1 81119 1fmcA 255 1.57e+01 1cydA c.2.1.2 29856 1l2tA 235 1.60e+01 c.37.1.12 73514 1cfr 285 1.60e+01 1cfr c.52.1.7 33312 1jq5A 370 1.70e+01 e.22.1.2 67084 1sep 261 1.72e+01 1oaa c.2.1.2 29830 1vhzA 198 1.73e+01 d.113.1.1 -10897 1b0uA 262 1.76e+01 1b0uA c.37.1.12 32370 1egzA 291 1.84e+01 7a3hA c.1.8.3 28828 1jalA 363 1.84e+01 c.37.1.8 84138 d.15.10.2 84139 1clc 639 1.88e+01 1clc a.102.1.2 18835 b.1.18.2 21872 1nox 205 1.89e+01 1nox d.90.1.1 40242 1k8kC 372 1.91e+01 b.69.4.1 68308 2liv 344 1.91e+01 2liv c.93.1.1 35708 1bmdA 327 1.92e+01 1bmdA c.2.1.5 30139 d.162.1.1 42106 1ixkA 315 1.93e+01 unknown_sccs -8099 1ksiA 642 2.05e+01 1ksiB b.30.2.1 24408 d.17.2.1 38043 d.17.2.1 38044 1ca1 370 2.06e+01 1ca1 a.124.1.1 19340 b.12.1.3 23648 1r13A 148 2.07e+01 d.169.1.1 -11646 h.1.1.1 -12895 1dzlA 505 2.15e+01 1dzlA b.121.6.1 23586 1bdmA 327 2.16e+01 1bmdA c.2.1.5 30137 d.162.1.1 42104 1oaa 259 2.16e+01 1oaa c.2.1.2 29829 1jbeA 128 2.22e+01 3chy c.23.1.1 62845 1mixA 206 2.23e+01 a.11.2.1 79166 b.55.1.5 79167 1kwsA 261 2.24e+01 c.68.1.7 73083 1jkgA 140 2.26e+01 d.17.4.2 66795 1dtyA 429 2.27e+01 1dtyA c.67.1.4 34495 2ltnA 181 2.37e+01 1led b.29.1.1 24024 1rz3A 201 2.39e+01 c.37.1.6 -7048 1o70A 324 2.41e+01 b.118.1.1 81115 b.118.1.1 81116 1fggA 261 2.43e+01 1fggA c.68.1.7 34576 1jr7A 311 2.43e+01 b.82.2.3 63255 1omzA 293 2.44e+01 c.68.1.15 87093 1uuhA 159 2.45e+01 d.169.1.4 -11651 1iugA 352 2.48e+01 c.67.1.3 -8176 1rtqA 299 2.51e+01 c.56.5.4 -7864 1a81A 254 2.54e+01 1a81A d.93.1.1 40507 d.93.1.1 40508 1aje 194 2.62e+01 1ctqA c.37.1.8 32071 1vhoA 346 2.66e+01 unknown_sccs -4283 c.56.5.4 -7893 1pzgA 331 2.67e+01 c.2.1.5 -5931 d.162.1.1 -11498 1dozA 309 2.69e+01 1ak1 c.92.1.1 35592 1ak1 310 2.73e+01 1ak1 c.92.1.1 35594 1ecxA 384 2.81e+01 1ecxA c.67.1.3 34431 1lokA 291 2.81e+01 c.56.5.4 78122 1cye 129 2.82e+01 3chy c.23.1.1 31077 1cauB 184 2.83e+01 1caxB b.82.1.2 28103 1ksiB 642 2.88e+01 1ksiB b.30.2.1 24409 d.17.2.1 38045 d.17.2.1 38046 1h09A 338 2.89e+01 b.109.1.1 83420 c.1.8.8 83421 1oakA 196 2.98e+01 1auq c.62.1.1 34138 1dy2A 180 2.99e+01 1koe d.169.1.5 42451 1eg5A 384 2.99e+01 1ecxA c.67.1.3 34429 1amp 291 3.00e+01 1amp c.56.5.4 33837 1delA 241 3.00e+01 1dekA c.37.1.1 31844 1i1nA 226 3.05e+01 c.66.1.7 71102 1kr5A 226 3.12e+01 c.66.1.7 68847 1o69A 394 3.30e+01 c.67.1.4 -8209 2rmcA 182 3.34e+01 2cpl b.62.1.1 27491 1dmgA 225 3.37e+01 1dmgA c.22.1.1 31036 1gdeA 389 3.39e+01 c.67.1.1 60456 1eesA 178 3.39e+01 1eesA c.37.1.8 32073 1tc1A 220 3.39e+01 1tc1A c.61.1.1 34083 1qwzA 235 3.42e+01 b.100.1.1 -4543 1dmaA 214 3.46e+01 1aerA d.166.1.1 42251 1jn5A 140 3.53e+01 d.17.4.2 66921 1fnsA 196 3.54e+01 1auq c.62.1.1 34136 1b64 91 3.54e+01 1b64 d.58.12.1 39306 1a7cA 379 3.63e+01 1sek e.1.1.1 42660 1pwbA 177 3.68e+01 d.169.1.1 -11641 h.1.1.1 -12890 1hcz 252 3.70e+01 1hcz b.2.6.1 22464 b.84.2.2 28250 1gd9A 389 3.71e+01 c.67.1.1 60454 1sskA 158 3.78e+01 1aerA 205 3.80e+01 1aerA d.166.1.1 42249 1kk1A 410 3.80e+01 b.43.3.1 72634 b.44.1.1 72635 c.37.1.8 72636 1umdA 367 3.85e+01 c.36.1.11 -6969 1e3dB 542 3.92e+01 1h2rL e.18.1.1 59189 1rz2A 254 3.94e+01