# List of top-scoring protein chains for T0276.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1souA 194 1.09e-25 1ehiA 377 4.48e-01 1iow c.30.1.2 31716 d.142.1.1 41484 1sg1X 161 1.38e+00 1bnlA 178 2.00e+00 1koe d.169.1.5 42444 1wbfA 242 3.64e+00 1led b.29.1.1 24050 1wblA 241 3.66e+00 1led b.29.1.1 24052 1uunA 184 4.88e+00 unknown_sccs -12370 1p77A 272 7.16e+00 c.2.1.7 -5965 c.58.1.5 -6371 1eu8A 409 7.50e+00 1eu8A c.94.1.1 59502 1qyuA 349 7.56e+00 unknown_sccs -10159 1v9fA 325 7.68e+00 1nd1A 202 8.79e+00 d.92.1.9 -10564 1o7dC 159 8.94e+00 b.30.5.6 86640 1e5xA 486 1.04e+01 c.79.1.1 59283 1koe 172 1.11e+01 1koe d.169.1.5 42448 1ar1A 558 1.14e+01 2occA f.24.1.1 43618 1dy1A 188 1.14e+01 1koe d.169.1.5 42450 1qleA 538 1.27e+01 2occA f.24.1.1 43620 1ebdA 455 1.28e+01 1lvl c.3.1.5 30577 c.3.1.5 30578 d.87.1.1 40210 1kicA 339 1.29e+01 c.70.1.1 72510 1fa0A 537 1.30e+01 1fa0B a.160.1.1 75837 d.218.1.3 75838 d.58.16.1 39335 1hozA 339 1.34e+01 c.70.1.1 65898 1hr6A 475 1.47e+01 1hr6A d.185.1.1 61164 d.185.1.1 61165 1dqwA 267 1.58e+01 1dqwA c.1.2.3 28551 1r4fA 339 1.76e+01 c.70.1.1 -8354 1w2wB 191 2.10e+01 1i6vA 314 2.19e+01 d.74.3.1 61852 d.181.1.1 61853 1ufkA 254 2.33e+01 unknown_sccs -8103 4thiA 362 2.58e+01 2thiA c.94.1.1 35793 1kkqA 269 2.61e+01 a.123.1.1 68679 1i7gA 287 2.66e+01 a.123.1.1 71121 3thiA 371 2.66e+01 2thiA c.94.1.1 35792 1k7lA 288 2.69e+01 a.123.1.1 68268 1egzA 291 2.72e+01 7a3hA c.1.8.3 28828 2thiA 379 2.73e+01 2thiA c.94.1.1 35794 1q6uA 245 2.76e+01 d.26.1.1 -9486 1c4wA 128 2.89e+01 3chy c.23.1.1 31046 1kxjA 205 2.90e+01 c.23.16.1 73153 1iag 202 2.94e+01 1atlA d.92.1.9 40319 1f1sA 814 3.00e+01 a.102.3.2 64928 b.1.18.2 64929 b.24.1.1 64930 b.30.5.2 64931 1k9vF 201 3.05e+01 c.23.16.1 68365 1s4nA 348 3.12e+01 unknown_sccs -8262 1eudA 311 3.19e+01 2scuA c.2.1.8 30312 c.23.4.1 31140 1gdeA 389 3.22e+01 c.67.1.1 60456 2chy 128 3.29e+01 3chy c.23.1.1 31081 1djuA 388 3.30e+01 1bjwA c.67.1.1 59116 1p59A 226 3.39e+01 a.96.1.1 87794 1ng1 294 3.45e+01 1ng1 a.24.13.1 16961 c.37.1.10 32272 1ls1A 295 3.45e+01 a.24.13.1 78170 c.37.1.10 78171 1jpnA 296 3.46e+01 a.24.13.1 67039 c.37.1.10 67040 1o87A 297 3.47e+01 a.24.13.1 -619 c.37.1.10 -7117 1efvB 255 3.49e+01 1efvB c.26.2.3 31634 1ihoA 283 3.56e+01 1ihoA c.26.1.4 62390 2xat 212 3.60e+01 2xat b.81.1.3 28058 2ng1 293 3.60e+01 1ng1 a.24.13.1 16962 c.37.1.10 32273 1ffh 294 3.61e+01 1ng1 a.24.13.1 16960 c.37.1.10 32271 1e2vA 251 3.66e+01 1hcz b.2.6.1 22468 b.84.2.2 28254 1rj9B 300 3.66e+01 a.24.13.1 -621 c.37.1.10 -7119 1zxq 192 3.74e+01 1zxq b.1.1.3 21657 b.1.1.4 21693 1oz4A 806 3.80e+01 b.52.2.3 -4340 c.37.1.20 -7235 c.37.1.20 -7236 d.31.1.1 -9532 1r7rA 816 3.80e+01 b.52.2.3 -4343 c.37.1.20 -7241 c.37.1.20 -7242 d.31.1.1 -9535 1m8nA 121 3.81e+01 b.81.2.1 78771 1uf3A 228 3.84e+01 unknown_sccs -11463 1lab 80 3.91e+01 1ghj b.84.1.1 28226 1vi6A 208 3.91e+01 c.23.15.1 -6489 1dy2A 180 3.94e+01 1koe d.169.1.5 42451 1cc8A 73 3.96e+01 1cc8A d.58.17.1 39343