# List of top-scoring protein chains for t04-100-30-near-backbone-11 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1souA 194 7.20e-36 3chy 128 6.81e-02 3chy c.23.1.1 31038 1v9fA 325 1.76e-01 1jbeA 128 2.67e-01 3chy c.23.1.1 62845 1srrA 124 3.05e-01 1dz3A c.23.1.1 31110 1f8yA 157 3.99e-01 1f8xA c.23.14.1 31395 1k2yX 463 8.83e-01 c.84.1.1 68063 c.84.1.1 68064 c.84.1.1 68065 d.129.2.1 68066 1w2wB 191 9.89e-01 1r13A 148 1.11e+00 d.169.1.1 -11646 h.1.1.1 -12895 1efvB 255 1.38e+00 1efvB c.26.2.3 31634 1nvmB 312 2.38e+00 c.2.1.3 86251 d.81.1.1 86252 1ihoA 283 3.23e+00 1ihoA c.26.1.4 62390 1a04A 215 3.44e+00 1a04A a.4.6.2 16234 c.23.1.1 31089 1h4vB 421 3.52e+00 1adjA c.51.1.1 60624 d.104.1.1 60625 1adjA 421 3.82e+00 1adjA c.51.1.1 33188 d.104.1.1 40737 1i1nA 226 4.32e+00 c.66.1.7 71102 1dqwA 267 4.73e+00 1dqwA c.1.2.3 28551 2lbp 346 5.06e+00 2liv c.93.1.1 35709 1gdeA 389 5.08e+00 c.67.1.1 60456 1gc5A 467 5.49e+00 1gc5A c.72.1.3 60429 1usgA 346 5.52e+00 c.93.1.1 -8635 1b93A 152 5.58e+00 1b93A c.24.1.2 31507 1mk4A 157 6.15e+00 d.108.1.1 84979 1p5dX 463 6.19e+00 c.84.1.1 -8554 c.84.1.1 -8555 c.84.1.1 -8556 d.129.2.1 -11029 1tmy 120 6.29e+00 1dbwA c.23.1.1 31083 1p1mA 406 6.66e+00 b.92.1.4 87696 c.1.9.9 87697 1vi6A 208 6.82e+00 c.23.15.1 -6489 1n81A 186 6.99e+00 a.185.1.1 85388 1poiA 317 7.23e+00 1poiA unknown_sccs 34153 1ka9H 200 7.93e+00 c.23.16.1 77308 1p77A 272 8.69e+00 c.2.1.7 -5965 c.58.1.5 -6371 1oz2A 331 8.87e+00 b.34.9.3 -3597 b.34.9.3 -3598 b.34.9.3 -3599 1mo9A 523 9.26e+00 c.3.1.5 79341 c.3.1.5 79342 d.87.1.1 79343 1dl5A 317 1.03e+01 1dl5A c.66.1.7 64720 d.197.1.1 64721 1jmxB 349 1.06e+01 b.69.2.2 66906 1upaA 573 1.11e+01 c.31.1.3 -6745 c.36.1.5 -6903 c.36.1.9 -6943 1i2kA 269 1.14e+01 e.17.1.1 -11995 1j6pA 418 1.14e+01 b.92.1.4 77089 c.1.9.9 77090 1nkd 65 1.15e+01 1nkd a.30.1.1 16974 1fw1A 216 1.16e+01 a.45.1.1 60051 c.47.1.5 60052 1wdnA 226 1.17e+01 1lst c.94.1.1 35816 1fmcA 255 1.20e+01 1cydA c.2.1.2 29856 1dljA 402 1.25e+01 1dliA a.100.1.4 18808 c.2.1.6 30212 c.26.3.1 31621 1lucB 324 1.29e+01 1lucA c.1.16.1 29548 1qstA 160 1.37e+01 1yghA d.108.1.1 40804 1fukA 165 1.47e+01 1fukA c.37.1.19 32409 1tiqA 180 1.50e+01 1mjhA 162 1.53e+01 1mjhA c.26.2.4 31639 1przA 252 1.57e+01 unknown_sccs -10158 1tyfA 193 1.61e+01 1tyfA c.14.1.1 30885 1ofuA 320 1.71e+01 c.32.1.1 86972 d.79.2.1 86973 1gggA 226 1.74e+01 1lst c.94.1.1 35817 1jtkA 136 1.83e+01 c.97.1.1 71862 1ct5A 256 1.84e+01 1ct5A c.1.6.2 28663 1rcuA 195 1.84e+01 unknown_sccs -7279 1dpgA 485 1.84e+01 1dpgA c.2.1.3 30074 d.81.1.5 39989 1tidB 119 1.89e+01 1o4wA 147 1.90e+01 c.120.1.1 86629 1iz6A 138 1.98e+01 b.34.5.2 76976 b.40.4.5 76977 1gcoA 261 2.06e+01 1ybvA c.2.1.2 29884 1jeyB 565 2.09e+01 1jeqB unknown_sccs -4431 unknown_sccs -7995 1geeA 261 2.11e+01 c.2.1.2 -5814 2ltnA 181 2.17e+01 1led b.29.1.1 24024 1mv8A 436 2.25e+01 a.100.1.4 85128 c.2.1.6 85129 c.26.3.1 85130 1uwzA 136 2.26e+01 1et0A 269 2.38e+01 1et0A e.17.1.1 43289 1gzsB 165 2.43e+01 a.168.1.1 76425 1mxrA 375 2.44e+01 a.25.1.2 85197 1kyqA 274 2.46e+01 c.2.1.11 73281 e.37.1.1 73282 2eifA 136 2.55e+01 1bkb b.34.5.2 24607 b.40.4.5 25339 1jenB 67 2.57e+01 1jenB d.156.1.1 42029 1k68A 140 2.62e+01 c.23.1.1 -6403 1km4A 247 2.66e+01 c.1.2.3 72740 1iioA 84 2.72e+01 a.39.4.1 66150 1ccwA 137 2.74e+01 1be1 c.23.6.1 31238 1dvjA 246 2.76e+01 1dvjA c.1.2.3 28546 1dhs 344 2.90e+01 1dhs c.31.1.1 31727 1kr4A 125 2.91e+01 d.58.5.2 72889 1fs0G 230 2.94e+01 1fs0G c.49.2.1 59999 1hbkA 94 2.95e+01 1aca a.11.1.1 60887 1j1jA 240 2.99e+01 a.118.16.1 -1637 1m7gA 211 3.28e+01 c.37.1.4 78724 1fre 42 3.32e+01 1fre g.43.1.1 45320 1ua4A 455 3.39e+01 c.72.1.3 -8416 1f5mA 180 3.42e+01 1f5mB d.110.2.1 40895 1hl2A 297 3.45e+01 c.1.10.1 83581 1lfpA 249 3.56e+01 e.39.1.1 73885 2liv 344 3.57e+01 2liv c.93.1.1 35708 1g2iA 166 3.60e+01 1g2iA c.23.16.2 31438 1hxrA 115 3.61e+01 1fwqA b.88.1.1 28392 1qysA 106 3.62e+01 unknown_sccs -13432 1e5xA 486 3.65e+01 c.79.1.1 59283 1rlzA 369 3.68e+01 1tvlA 454 3.76e+01 1g63A 181 3.83e+01 1g5qA c.34.1.1 60299 1fyeA 229 3.85e+01 1fyeA c.23.16.4 31477 1rylA 167 3.91e+01 1mc0A 368 3.93e+01 d.110.2.1 78937 d.110.2.1 78938 1ih8A 271 3.95e+01 2nsyA c.26.2.1 62377