# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1souA 194 5.51e-29 1ehiA 377 1.01e-01 1iow c.30.1.2 31716 d.142.1.1 41484 1sg1X 161 2.08e-01 1dqwA 267 1.54e+00 1dqwA c.1.2.3 28551 1c7sA 858 1.64e+00 1qba b.1.18.2 21812 b.2.2.3 22408 c.1.8.6 29011 d.92.2.1 40410 1bmdA 327 1.88e+00 1bmdA c.2.1.5 30139 d.162.1.1 42106 1bdmA 327 2.65e+00 1bmdA c.2.1.5 30137 d.162.1.1 42104 1jeyB 565 3.13e+00 1jeqB unknown_sccs -4431 unknown_sccs -7995 1ltlA 279 4.12e+00 b.40.4.11 84701 1v9fA 325 4.42e+00 1ca1 370 5.00e+00 1ca1 a.124.1.1 19340 b.12.1.3 23648 1r13A 148 5.43e+00 d.169.1.1 -11646 h.1.1.1 -12895 1f8yA 157 5.85e+00 1f8xA c.23.14.1 31395 1oxxK 353 6.67e+00 b.40.6.3 -3969 c.37.1.12 -7187 1poiA 317 7.05e+00 1poiA unknown_sccs 34153 1oxsC 353 9.11e+00 b.40.6.3 87519 c.37.1.12 87520 3chy 128 9.13e+00 3chy c.23.1.1 31038 1ecfA 504 9.32e+00 1ecfB c.61.1.1 34053 d.153.1.1 41820 1koe 172 9.33e+00 1koe d.169.1.5 42448 1usgA 346 9.43e+00 c.93.1.1 -8635 1ixkA 315 9.45e+00 unknown_sccs -8099 1hgxA 183 1.03e+01 1tc1A c.61.1.1 34027 1fmcA 255 1.08e+01 1cydA c.2.1.2 29856 1to6A 371 1.17e+01 1pzgA 331 1.18e+01 c.2.1.5 -5931 d.162.1.1 -11498 2lbp 346 1.26e+01 2liv c.93.1.1 35709 1mxgA 435 1.27e+01 b.71.1.1 85193 c.1.8.1 85194 1vhoA 346 1.40e+01 unknown_sccs -4283 c.56.5.4 -7893 1l2tA 235 1.48e+01 c.37.1.12 73514 1iugA 352 1.50e+01 c.67.1.3 -8176 1guzA 310 1.54e+01 c.2.1.5 65586 d.162.1.1 65587 1dozA 309 1.56e+01 1ak1 c.92.1.1 35592 1jkgA 140 1.68e+01 d.17.4.2 66795 1quqB 121 1.79e+01 1quqB b.40.4.3 25305 1b0uA 262 1.80e+01 1b0uA c.37.1.12 32370 1rpa 342 1.82e+01 1cviA c.60.1.2 33983 1rjdA 334 1.92e+01 unknown_sccs -8079 1ls1A 295 2.14e+01 a.24.13.1 78170 c.37.1.10 78171 1jvbA 347 2.18e+01 b.35.1.2 77181 c.2.1.1 77182 1vhtA 218 2.28e+01 c.37.1.1 -7004 1nox 205 2.32e+01 1nox d.90.1.1 40242 1w2wB 191 2.34e+01 1hr6A 475 2.37e+01 1hr6A d.185.1.1 61164 d.185.1.1 61165 1ig3A 263 2.45e+01 1ig3A b.82.6.1 62358 c.100.1.1 62359 2hpaA 342 2.48e+01 1cviA c.60.1.2 33985 1dl5A 317 2.52e+01 1dl5A c.66.1.7 64720 d.197.1.1 64721 1i7pA 274 2.54e+01 b.43.4.2 66048 c.25.1.1 66049 2rmcA 182 2.61e+01 2cpl b.62.1.1 27491 1mk4A 157 2.62e+01 d.108.1.1 84979 2ltnA 181 2.78e+01 1led b.29.1.1 24024 1jnrB 150 2.82e+01 d.58.1.5 66969 1i1nA 226 2.85e+01 c.66.1.7 71102 1lldA 319 2.87e+01 3ldh c.2.1.5 30177 d.162.1.1 42144 1rtm1 149 2.87e+01 1rtm1 1jbeA 128 2.87e+01 3chy c.23.1.1 62845 1i50F 155 2.89e+01 d.78.1.2 61760 1m1nB 522 2.90e+01 c.92.2.3 78418 1omzA 293 2.95e+01 c.68.1.15 87093 1uunA 184 3.00e+01 unknown_sccs -12370 2ts1 419 3.03e+01 2ts1 c.26.1.1 31564 1l7mA 211 3.03e+01 c.108.1.4 73664 1sv6A 269 3.12e+01 1v84A 253 3.13e+01 1dgwA 178 3.16e+01 1dgwA b.82.1.2 28090 1ohvA 472 3.20e+01 c.67.1.4 -8181 1k2yX 463 3.26e+01 c.84.1.1 68063 c.84.1.1 68064 c.84.1.1 68065 d.129.2.1 68066 7aatA 401 3.40e+01 1ajsA c.67.1.1 34250 1dmhA 311 3.41e+01 1dmhA b.3.6.1 22633 1dqtA 117 3.42e+01 1ah1 b.1.1.1 20653 1f5mA 180 3.44e+01 1f5mB d.110.2.1 40895 1rf6A 427 3.66e+01 d.68.2.2 -10314 2liv 344 3.71e+01 2liv c.93.1.1 35708 1nd6A 354 3.72e+01 c.60.1.2 80407 1e3dB 542 3.80e+01 1h2rL e.18.1.1 59189 1hyhA 309 3.81e+01 1hyhA c.2.1.5 30150 d.162.1.1 42117 1vheA 373 3.83e+01 unknown_sccs -4280 c.56.5.4 -7890 1k4nA 192 3.95e+01 d.32.1.5 72059