# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1souA 194 1.70e-30 1gteA 1025 3.35e-01 a.1.2.2 70440 c.1.4.1 70441 c.3.1.1 70442 c.4.1.1 70443 d.58.1.5 70444 1h7wA 1025 3.75e-01 1h7wA a.1.2.2 15683 c.1.4.1 28628 c.3.1.1 30324 c.4.1.1 30609 d.58.1.5 39007 1dqwA 267 4.64e-01 1dqwA c.1.2.3 28551 1bmdA 327 7.48e-01 1bmdA c.2.1.5 30139 d.162.1.1 42106 1i7pA 274 8.31e-01 b.43.4.2 66048 c.25.1.1 66049 1rjdA 334 8.33e-01 unknown_sccs -8079 2lbp 346 9.09e-01 2liv c.93.1.1 35709 1ehiA 377 9.49e-01 1iow c.30.1.2 31716 d.142.1.1 41484 1pzgA 331 1.18e+00 c.2.1.5 -5931 d.162.1.1 -11498 1usgA 346 1.18e+00 c.93.1.1 -8635 1bdmA 327 1.19e+00 1bmdA c.2.1.5 30137 d.162.1.1 42104 1to6A 371 1.22e+00 1guzA 310 1.42e+00 c.2.1.5 65586 d.162.1.1 65587 1lldA 319 2.02e+00 3ldh c.2.1.5 30177 d.162.1.1 42144 1rf6A 427 2.82e+00 d.68.2.2 -10314 1omzA 293 2.82e+00 c.68.1.15 87093 1oxxK 353 2.97e+00 b.40.6.3 -3969 c.37.1.12 -7187 1mk4A 157 3.41e+00 d.108.1.1 84979 2liv 344 3.74e+00 2liv c.93.1.1 35708 1v9fA 325 3.78e+00 1q7zA 566 3.98e+00 c.1.21.2 -5638 c.1.26.1 -5666 1oxsC 353 4.16e+00 b.40.6.3 87519 c.37.1.12 87520 1fmcA 255 4.18e+00 1cydA c.2.1.2 29856 1b0uA 262 4.20e+00 1b0uA c.37.1.12 32370 1ixkA 315 5.05e+00 unknown_sccs -8099 1hyhA 309 5.24e+00 1hyhA c.2.1.5 30150 d.162.1.1 42117 1ca1 370 5.41e+00 1ca1 a.124.1.1 19340 b.12.1.3 23648 1nox 205 5.43e+00 1nox d.90.1.1 40242 1l2tA 235 5.81e+00 c.37.1.12 73514 1w2wB 191 6.27e+00 1ur5A 309 6.57e+00 c.2.1.5 -5910 d.162.1.1 -11477 1ls1A 295 7.58e+00 a.24.13.1 78170 c.37.1.10 78171 1f8yA 157 8.08e+00 1f8xA c.23.14.1 31395 1gcoA 261 8.35e+00 1ybvA c.2.1.2 29884 1geeA 261 8.35e+00 c.2.1.2 -5814 1f5mA 180 8.39e+00 1f5mB d.110.2.1 40895 1np6A 174 8.58e+00 c.37.1.10 85954 1cfr 285 8.88e+00 1cfr c.52.1.7 33312 1jflA 228 8.99e+00 c.78.2.1 71656 c.78.2.1 71657 1s14A 194 9.21e+00 d.122.1.2 -10973 1g2iA 166 1.00e+01 1g2iA c.23.16.2 31438 1p1mA 406 1.04e+01 b.92.1.4 87696 c.1.9.9 87697 1ja9A 274 1.06e+01 c.2.1.2 62817 1ejxC 567 1.08e+01 b.92.1.1 83184 c.1.9.2 83185 1ndh 272 1.09e+01 1ndh b.43.4.2 25662 c.25.1.1 31552 1dozA 309 1.09e+01 1ak1 c.92.1.1 35592 1hgxA 183 1.10e+01 1tc1A c.61.1.1 34027 1kqpA 271 1.13e+01 c.26.2.1 72883 1ih8A 271 1.13e+01 2nsyA c.26.2.1 62377 1vhoA 346 1.17e+01 unknown_sccs -4283 c.56.5.4 -7893 1cf9A 753 1.20e+01 1cf9A c.23.16.3 31441 e.5.1.1 42815 1obbA 480 1.25e+01 c.2.1.5 86760 d.162.1.2 86761 1ltlA 279 1.25e+01 b.40.4.11 84701 1p80A 753 1.26e+01 c.23.16.3 -6547 e.5.1.1 -11840 1sv6A 269 1.29e+01 1o6zA 303 1.31e+01 c.2.1.5 81107 d.162.1.1 81108 1jeyB 565 1.40e+01 1jeqB unknown_sccs -4431 unknown_sccs -7995 1ll7A 392 1.43e+01 c.1.8.5 78085 d.26.3.1 78086 1dljA 402 1.46e+01 1dliA a.100.1.4 18808 c.2.1.6 30212 c.26.3.1 31621 1egwA 77 1.48e+01 1mnmA d.88.1.1 40234 1efvB 255 1.50e+01 1efvB c.26.2.3 31634 1i60A 278 1.53e+01 c.1.15.4 71118 1pujA 282 1.55e+01 c.37.1.8 88294 1mixA 206 1.56e+01 a.11.2.1 79166 b.55.1.5 79167 1d2kA 392 1.57e+01 1d2kA c.1.8.5 29008 d.26.3.1 38442 1qh8A 478 1.63e+01 1qguA c.92.2.3 35633 1o69A 394 1.65e+01 c.67.1.4 -8209 1u08A 386 1.67e+01 2prd 174 1.68e+01 2prd b.40.5.1 25435 2ng1 293 1.71e+01 1ng1 a.24.13.1 16962 c.37.1.10 32273 1jnrB 150 1.78e+01 d.58.1.5 66969 1j6pA 418 1.79e+01 b.92.1.4 77089 c.1.9.9 77090 1cnv 299 1.79e+01 1cnv c.1.8.5 28989 4xis 387 1.85e+01 4xis c.1.15.3 29421 3xis 387 1.86e+01 4xis c.1.15.3 29423 1vheA 373 1.96e+01 unknown_sccs -4280 c.56.5.4 -7890 1mzhA 225 1.97e+01 c.1.10.1 79698 1mxgA 435 2.02e+01 b.71.1.1 85193 c.1.8.1 85194 2trxA 108 2.02e+01 1thx c.47.1.1 32719 1hjxA 362 2.05e+01 c.1.8.5 83512 d.26.3.1 83513 1qysA 106 2.05e+01 unknown_sccs -13432 1s2dA 167 2.05e+01 c.23.14.1 -6469 1dgwA 178 2.09e+01 1dgwA b.82.1.2 28090 1rpxA 230 2.10e+01 1rpxA c.1.2.2 28536 1uouA 474 2.15e+01 a.46.2.1 -951 c.27.1.1 -6642 d.41.3.1 -9715 6ldh 330 2.15e+01 3ldh c.2.1.5 30161 d.162.1.1 42128 1i50F 155 2.24e+01 d.78.1.2 61760 1r13A 148 2.30e+01 d.169.1.1 -11646 h.1.1.1 -12895 1gegA 256 2.31e+01 1ybvA c.2.1.2 29888 8abp 306 2.34e+01 8abp c.93.1.1 35647 1poiA 317 2.37e+01 1poiA unknown_sccs 34153 1dmhA 311 2.42e+01 1dmhA b.3.6.1 22633 1kwsA 261 2.49e+01 c.68.1.7 73083 1fnd 314 2.54e+01 1fnc b.43.4.2 25626 c.25.1.1 31516 1l0lA 446 2.56e+01 d.185.1.1 84482 d.185.1.1 84483 1brwA 433 2.62e+01 1brwA a.46.2.1 17764 c.27.1.1 31628 d.41.3.1 38626 1srrA 124 2.63e+01 1dz3A c.23.1.1 31110 1dhkB 223 2.76e+01 1led b.29.1.1 24157 1uedA 406 2.80e+01 a.104.1.1 -1459 1qopB 396 2.82e+01 2tysB c.79.1.1 35270 1oaa 259 2.83e+01 1oaa c.2.1.2 29829 1l3kA 196 2.91e+01 d.58.7.1 73539 d.58.7.1 73540 1efdN 266 2.91e+01 1efdN c.92.2.1 35597 1ass 159 2.92e+01 1a6dA c.8.5.2 30818 1qstA 160 2.92e+01 1yghA d.108.1.1 40804 1iv8A 720 2.94e+01 b.71.1.1 76842 c.1.8.1 76843 1th8A 145 2.94e+01 1fnc 314 3.19e+01 1fnc b.43.4.2 25627 c.25.1.1 31517 1seiA 130 3.22e+01 1seiA d.140.1.1 41463 1nciA 110 3.23e+01 1edhA b.1.6.1 22191 1u2fA 90 3.27e+01 1u2fA d.58.7.1 39168 3chy 128 3.29e+01 3chy c.23.1.1 31038 2ts1 419 3.34e+01 2ts1 c.26.1.1 31564 1k2yX 463 3.39e+01 c.84.1.1 68063 c.84.1.1 68064 c.84.1.1 68065 d.129.2.1 68066 1vhqA 232 3.40e+01 c.23.16.2 -6514 1qh8B 519 3.45e+01 1qguB c.92.2.3 35634 1m1nB 522 3.49e+01 c.92.2.3 78418 1jg1A 235 3.54e+01 c.66.1.7 66661 1mho 88 3.55e+01 1b4cA a.39.1.2 17171 1ecfA 504 3.56e+01 1ecfB c.61.1.1 34053 d.153.1.1 41820 1auoA 218 3.59e+01 1auoA c.69.1.14 34716 1c7sA 858 3.61e+01 1qba b.1.18.2 21812 b.2.2.3 22408 c.1.8.6 29011 d.92.2.1 40410 1p5dX 463 3.65e+01 c.84.1.1 -8554 c.84.1.1 -8555 c.84.1.1 -8556 d.129.2.1 -11029 1koe 172 3.66e+01 1koe d.169.1.5 42448 1v4vA 376 3.71e+01 c.87.1.3 -8583 1muwA 386 3.74e+01 c.1.15.3 79495 1rpa 342 3.77e+01 1cviA c.60.1.2 33983 1ofuA 320 3.80e+01 c.32.1.1 86972 d.79.2.1 86973 1a04A 215 3.80e+01 1a04A a.4.6.2 16234 c.23.1.1 31089 1nngA 153 3.87e+01 d.38.1.1 -9636 1quqB 121 3.96e+01 1quqB b.40.4.3 25305 1uuhA 159 3.98e+01 d.169.1.4 -11651 1ppjA 446 3.98e+01