# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1souA 194 9.12e-34 3chy 128 3.05e-01 3chy c.23.1.1 31038 1dqwA 267 5.37e-01 1dqwA c.1.2.3 28551 1jbeA 128 6.43e-01 3chy c.23.1.1 62845 1l7mA 211 6.64e-01 c.108.1.4 73664 1fukA 165 8.61e-01 1fukA c.37.1.19 32409 1f8yA 157 1.23e+00 1f8xA c.23.14.1 31395 1dl5A 317 1.24e+00 1dl5A c.66.1.7 64720 d.197.1.1 64721 1j97A 211 1.38e+00 1f5sA c.108.1.4 62753 1nvmB 312 1.43e+00 c.2.1.3 86251 d.81.1.1 86252 2ltnA 181 1.65e+00 1led b.29.1.1 24024 1poiA 317 1.67e+00 1poiA unknown_sccs 34153 1ka9H 200 1.71e+00 c.23.16.1 77308 1r13A 148 1.73e+00 d.169.1.1 -11646 h.1.1.1 -12895 1uu1A 335 1.84e+00 c.67.1.1 -8146 1efvB 255 1.93e+00 1efvB c.26.2.3 31634 1qoiA 177 2.41e+00 2cpl b.62.1.1 27490 7aatA 401 3.24e+00 1ajsA c.67.1.1 34250 1h4vB 421 3.24e+00 1adjA c.51.1.1 60624 d.104.1.1 60625 1tidB 119 4.18e+00 1adjA 421 4.43e+00 1adjA c.51.1.1 33188 d.104.1.1 40737 1srrA 124 4.48e+00 1dz3A c.23.1.1 31110 1aj2 282 4.61e+00 1aj2 c.1.21.1 29665 1v9fA 325 4.82e+00 1wdnA 226 5.48e+00 1lst c.94.1.1 35816 1k68A 140 5.99e+00 c.23.1.1 -6403 1fyeA 229 6.17e+00 1fyeA c.23.16.4 31477 1e3jA 352 6.31e+00 1e3jA b.35.1.2 24765 c.2.1.1 29781 1g2iA 166 6.55e+00 1g2iA c.23.16.2 31438 1i1nA 226 7.24e+00 c.66.1.7 71102 1omzA 293 7.75e+00 c.68.1.15 87093 1tmy 120 8.49e+00 1dbwA c.23.1.1 31083 1gs5A 258 8.62e+00 c.73.1.2 70395 1e20A 209 8.89e+00 1e20A c.34.1.1 31759 1mo9A 523 9.10e+00 c.3.1.5 79341 c.3.1.5 79342 d.87.1.1 79343 1km4A 247 9.95e+00 c.1.2.3 72740 1jtkA 136 1.03e+01 c.97.1.1 71862 1mvlA 209 1.03e+01 c.34.1.1 85146 1vi6A 208 1.03e+01 c.23.15.1 -6489 1uwzA 136 1.06e+01 1jnrA 643 1.09e+01 a.7.3.1 66966 c.3.1.4 66967 d.168.1.1 66968 1bea 127 1.10e+01 1bea a.52.1.2 17826 1p77A 272 1.29e+01 c.2.1.7 -5965 c.58.1.5 -6371 1dvjA 246 1.29e+01 1dvjA c.1.2.3 28546 7odcA 424 1.34e+01 7odcA b.49.2.3 26488 c.1.6.1 28650 1gdeA 389 1.43e+01 c.67.1.1 60456 1jmxB 349 1.44e+01 b.69.2.2 66906 1fmcA 255 1.44e+01 1cydA c.2.1.2 29856 1dgfA 497 1.45e+01 1cf9A e.5.1.1 42782 1a4pA 96 1.62e+01 1b4cA a.39.1.2 17176 1tc5A 194 1.63e+01 1jg1A 235 1.79e+01 c.66.1.7 66661 1nhp 447 1.85e+01 1nhp c.3.1.5 30549 c.3.1.5 30550 d.87.1.1 40196 1mjhA 162 1.89e+01 1mjhA c.26.2.4 31639 1pl8A 356 1.96e+01 b.35.1.2 -3716 c.2.1.1 -5740 1v88A 130 2.01e+01 1qstA 160 2.17e+01 1yghA d.108.1.1 40804 1ccwA 137 2.19e+01 1be1 c.23.6.1 31238 1kr4A 125 2.20e+01 d.58.5.2 72889 1p4uA 153 2.43e+01 b.1.10.2 87780 1vi9A 299 2.49e+01 c.72.1.5 -8393 1ihnA 113 2.52e+01 1ihnA c.103.1.1 62388 5nul 138 2.57e+01 5nul c.23.5.1 31191 1ihoA 283 2.60e+01 1ihoA c.26.1.4 62390 1nijA 318 2.67e+01 c.37.1.10 85741 d.237.1.1 85742 1m6dA 214 2.70e+01 d.3.1.1 84849 1kssA 571 2.75e+01 a.138.1.3 72928 c.3.1.4 72929 d.168.1.1 72930 1q9iA 571 2.75e+01 a.138.1.3 -2051 c.3.1.4 -6041 d.168.1.1 -11607 1o4vA 183 2.76e+01 c.23.8.1 86628 1gc5A 467 2.79e+01 1gc5A c.72.1.3 60429 1scuA 288 2.81e+01 2scuA c.2.1.8 30307 c.23.4.1 31135 1fw1A 216 2.91e+01 a.45.1.1 60051 c.47.1.5 60052 1ofuA 320 2.95e+01 c.32.1.1 86972 d.79.2.1 86973 1ku1A 230 3.14e+01 a.118.3.1 72996 1jeyB 565 3.23e+01 1jeqB unknown_sccs -4431 unknown_sccs -7995 1e39A 571 3.30e+01 1qjdA a.138.1.3 19694 c.3.1.4 30431 d.168.1.1 42314 1a99A 344 3.39e+01 1pot c.94.1.1 35812 1augA 215 3.42e+01 1a2zA c.56.4.1 33798 1lk5A 229 3.47e+01 unknown_sccs 73960 d.58.40.1 73961 1nhs 447 3.53e+01 1nhp c.3.1.5 30555 c.3.1.5 30556 d.87.1.1 40199 1qq7A 253 3.65e+01 1qq5A c.108.1.1 43329 1b93A 152 3.67e+01 1b93A c.24.1.2 31507 1b16A 254 3.68e+01 1b16A c.2.1.2 29875 1e4yA 214 3.69e+01 1zin c.37.1.1 31901 g.41.2.1 45181 1gcoA 261 3.97e+01 1ybvA c.2.1.2 29884