# TARGET T0275 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0275.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 1062 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.036 0.005 0.015 0.006 0.160 0.778 2 F 0.144 0.014 0.011 0.003 0.175 0.653 3 K 0.291 0.007 0.004 0.001 0.141 0.556 4 T 0.779 0.004 0.001 0.001 0.042 0.173 5 I 0.979 0.001 0.001 0.001 0.004 0.015 6 L 0.994 0.001 0.001 0.001 0.001 0.005 7 L 0.992 0.001 0.001 0.001 0.002 0.006 8 A 0.957 0.001 0.001 0.001 0.010 0.032 9 Y 0.665 0.005 0.001 0.001 0.070 0.259 10 D 0.119 0.006 0.003 0.001 0.225 0.645 11 G 0.011 0.005 0.004 0.006 0.252 0.721 12 S 0.004 0.005 0.008 0.068 0.305 0.611 13 E 0.001 0.001 0.030 0.874 0.072 0.023 14 H 0.001 0.001 0.033 0.904 0.046 0.016 15 A 0.001 0.001 0.010 0.973 0.010 0.006 16 R 0.001 0.001 0.004 0.989 0.003 0.003 17 R 0.001 0.001 0.004 0.989 0.003 0.003 18 A 0.001 0.001 0.002 0.995 0.002 0.002 19 A 0.001 0.001 0.001 0.997 0.001 0.001 20 E 0.001 0.001 0.001 0.997 0.001 0.001 21 V 0.001 0.001 0.002 0.995 0.002 0.001 22 A 0.001 0.001 0.002 0.993 0.001 0.003 23 K 0.001 0.001 0.003 0.992 0.002 0.002 24 A 0.001 0.001 0.003 0.993 0.002 0.002 25 E 0.001 0.001 0.004 0.988 0.003 0.004 26 A 0.001 0.001 0.004 0.989 0.004 0.003 27 E 0.001 0.001 0.009 0.982 0.005 0.003 28 A 0.001 0.001 0.012 0.958 0.017 0.011 29 H 0.001 0.001 0.028 0.835 0.059 0.076 30 G 0.001 0.001 0.002 0.002 0.120 0.874 31 A 0.044 0.002 0.003 0.001 0.173 0.778 32 R 0.823 0.004 0.001 0.001 0.026 0.147 33 L 0.992 0.001 0.001 0.001 0.001 0.006 34 I 0.996 0.001 0.001 0.001 0.001 0.003 35 V 0.998 0.001 0.001 0.001 0.001 0.002 36 V 0.994 0.001 0.001 0.001 0.001 0.005 37 H 0.978 0.001 0.001 0.001 0.003 0.018 38 A 0.893 0.001 0.001 0.001 0.017 0.087 39 Y 0.582 0.006 0.003 0.001 0.072 0.336 40 E 0.266 0.009 0.005 0.003 0.183 0.533 41 P 0.066 0.021 0.008 0.005 0.235 0.664 42 V 0.021 0.020 0.011 0.003 0.291 0.654 43 P 0.016 0.019 0.101 0.017 0.474 0.373 44 D 0.007 0.007 0.296 0.044 0.461 0.185 45 Y 0.006 0.009 0.313 0.072 0.460 0.139 46 L 0.007 0.016 0.103 0.136 0.434 0.303 47 G 0.006 0.015 0.022 0.122 0.309 0.525 48 E 0.006 0.007 0.028 0.327 0.211 0.421 49 P 0.007 0.006 0.034 0.707 0.105 0.141 50 F 0.008 0.005 0.036 0.828 0.061 0.061 51 F 0.008 0.003 0.011 0.908 0.030 0.039 52 E 0.007 0.001 0.006 0.941 0.018 0.027 53 E 0.003 0.001 0.004 0.977 0.009 0.007 54 A 0.002 0.001 0.003 0.983 0.006 0.005 55 L 0.001 0.001 0.002 0.991 0.003 0.004 56 R 0.001 0.001 0.002 0.991 0.003 0.004 57 R 0.001 0.001 0.002 0.987 0.004 0.006 58 R 0.001 0.001 0.002 0.979 0.005 0.013 59 L 0.001 0.001 0.002 0.990 0.003 0.004 60 E 0.001 0.001 0.004 0.988 0.005 0.003 61 R 0.001 0.001 0.006 0.976 0.008 0.009 62 A 0.001 0.001 0.005 0.973 0.007 0.015 63 E 0.001 0.001 0.004 0.979 0.006 0.011 64 G 0.001 0.001 0.005 0.977 0.008 0.010 65 V 0.001 0.001 0.004 0.981 0.006 0.008 66 L 0.001 0.001 0.002 0.988 0.003 0.006 67 E 0.001 0.001 0.001 0.997 0.001 0.001 68 E 0.001 0.001 0.001 0.996 0.001 0.001 69 A 0.001 0.001 0.001 0.996 0.001 0.001 70 R 0.001 0.001 0.002 0.995 0.002 0.001 71 A 0.001 0.001 0.004 0.991 0.002 0.003 72 L 0.001 0.001 0.006 0.976 0.006 0.012 73 T 0.001 0.001 0.008 0.892 0.016 0.082 74 G 0.001 0.001 0.001 0.004 0.026 0.968 75 V 0.006 0.003 0.001 0.001 0.046 0.943 76 P 0.061 0.007 0.005 0.002 0.110 0.815 77 K 0.175 0.009 0.040 0.006 0.223 0.547 78 E 0.499 0.010 0.033 0.010 0.171 0.277 79 D 0.721 0.003 0.018 0.013 0.099 0.147 80 A 0.865 0.003 0.004 0.012 0.038 0.077 81 L 0.927 0.003 0.001 0.009 0.019 0.041 82 L 0.904 0.009 0.002 0.011 0.024 0.050 83 L 0.737 0.013 0.003 0.014 0.160 0.073 84 E 0.331 0.010 0.005 0.018 0.377 0.259 85 G 0.038 0.007 0.003 0.010 0.456 0.486 86 V 0.021 0.027 0.001 0.023 0.284 0.645 87 P 0.002 0.003 0.009 0.821 0.051 0.115 88 A 0.001 0.001 0.005 0.986 0.006 0.003 89 E 0.001 0.001 0.008 0.981 0.009 0.002 90 A 0.001 0.001 0.009 0.977 0.007 0.004 91 I 0.002 0.001 0.005 0.985 0.004 0.003 92 L 0.001 0.001 0.002 0.993 0.002 0.002 93 Q 0.001 0.001 0.001 0.995 0.002 0.002 94 A 0.001 0.001 0.002 0.995 0.001 0.001 95 A 0.001 0.001 0.002 0.993 0.002 0.002 96 R 0.001 0.001 0.007 0.984 0.006 0.003 97 A 0.001 0.001 0.010 0.947 0.024 0.018 98 E 0.001 0.001 0.021 0.787 0.115 0.075 99 K 0.003 0.003 0.008 0.035 0.325 0.626 100 A 0.012 0.002 0.006 0.003 0.516 0.462 101 D 0.134 0.002 0.003 0.001 0.401 0.460 102 L 0.950 0.003 0.001 0.001 0.011 0.035 103 I 0.996 0.001 0.001 0.001 0.001 0.002 104 V 0.996 0.001 0.001 0.001 0.001 0.002 105 M 0.957 0.001 0.001 0.001 0.009 0.032 106 G 0.544 0.003 0.002 0.001 0.131 0.319 107 T 0.163 0.009 0.010 0.002 0.333 0.483 108 R 0.068 0.034 0.031 0.003 0.429 0.435 109 G 0.052 0.019 0.043 0.012 0.542 0.332 110 L 0.040 0.019 0.075 0.081 0.513 0.272 111 G 0.052 0.029 0.072 0.101 0.436 0.309 112 A 0.040 0.021 0.126 0.323 0.346 0.143 113 L 0.027 0.015 0.125 0.495 0.245 0.093 114 G 0.042 0.011 0.181 0.402 0.266 0.097 115 S 0.073 0.011 0.244 0.342 0.232 0.097 116 L 0.111 0.020 0.176 0.353 0.232 0.108 117 F 0.088 0.046 0.070 0.337 0.276 0.184 118 L 0.055 0.024 0.019 0.242 0.269 0.391 119 G 0.012 0.004 0.004 0.115 0.234 0.632 120 S 0.006 0.003 0.011 0.758 0.103 0.121 121 Q 0.003 0.002 0.007 0.954 0.017 0.017 122 S 0.002 0.001 0.006 0.980 0.008 0.004 123 Q 0.001 0.001 0.006 0.982 0.007 0.003 124 R 0.003 0.001 0.011 0.974 0.008 0.004 125 V 0.004 0.001 0.012 0.969 0.009 0.005 126 V 0.004 0.001 0.026 0.943 0.021 0.005 127 A 0.003 0.001 0.022 0.925 0.035 0.015 128 E 0.012 0.005 0.066 0.545 0.188 0.183 129 A 0.017 0.010 0.011 0.031 0.446 0.486 130 P 0.035 0.005 0.005 0.002 0.263 0.690 131 C 0.162 0.004 0.002 0.001 0.240 0.591 132 P 0.551 0.002 0.001 0.001 0.112 0.334 133 V 0.974 0.002 0.001 0.001 0.006 0.018 134 L 0.994 0.001 0.001 0.001 0.001 0.004 135 L 0.990 0.001 0.001 0.001 0.001 0.008 136 V 0.898 0.001 0.001 0.001 0.006 0.094 137 R 0.448 0.002 0.001 0.001 0.084 0.464