# TARGET T0275 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0275.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 1062 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.013 0.758 0.008 0.016 0.005 0.001 0.001 0.010 0.112 0.043 0.011 0.021 2 F 0.002 0.009 0.747 0.016 0.013 0.002 0.005 0.002 0.049 0.089 0.020 0.009 0.037 3 K 0.004 0.003 0.385 0.025 0.004 0.001 0.007 0.008 0.135 0.368 0.004 0.048 0.008 4 T 0.007 0.001 0.066 0.006 0.001 0.001 0.037 0.229 0.592 0.027 0.001 0.007 0.027 5 I 0.008 0.001 0.004 0.002 0.001 0.001 0.079 0.698 0.201 0.001 0.001 0.003 0.003 6 L 0.022 0.001 0.002 0.001 0.001 0.001 0.119 0.731 0.119 0.001 0.001 0.003 0.002 7 L 0.015 0.001 0.007 0.001 0.001 0.001 0.093 0.667 0.208 0.001 0.001 0.004 0.003 8 A 0.013 0.001 0.120 0.003 0.001 0.001 0.033 0.254 0.543 0.006 0.001 0.008 0.017 9 Y 0.003 0.011 0.398 0.008 0.004 0.001 0.005 0.022 0.346 0.144 0.023 0.012 0.023 10 D 0.001 0.015 0.357 0.003 0.016 0.003 0.001 0.001 0.036 0.440 0.117 0.004 0.007 11 G 0.001 0.006 0.263 0.001 0.009 0.007 0.001 0.001 0.003 0.592 0.118 0.001 0.002 12 S 0.001 0.005 0.468 0.001 0.015 0.121 0.001 0.001 0.001 0.340 0.048 0.001 0.001 13 E 0.001 0.001 0.007 0.001 0.033 0.896 0.001 0.001 0.001 0.008 0.055 0.001 0.001 14 H 0.001 0.001 0.011 0.001 0.025 0.919 0.001 0.001 0.001 0.006 0.037 0.001 0.001 15 A 0.001 0.001 0.006 0.001 0.004 0.979 0.001 0.001 0.001 0.003 0.007 0.001 0.001 16 R 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 R 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 18 A 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 19 A 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 20 E 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 21 V 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 22 A 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 23 K 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 24 A 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 25 E 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 26 A 0.001 0.001 0.002 0.001 0.003 0.983 0.001 0.001 0.001 0.004 0.008 0.001 0.001 27 E 0.001 0.001 0.005 0.001 0.009 0.945 0.001 0.001 0.001 0.004 0.035 0.001 0.001 28 A 0.001 0.001 0.012 0.001 0.012 0.799 0.001 0.001 0.001 0.006 0.170 0.001 0.001 29 H 0.001 0.001 0.008 0.001 0.005 0.112 0.001 0.001 0.001 0.016 0.857 0.001 0.001 30 G 0.001 0.001 0.048 0.002 0.003 0.002 0.001 0.001 0.001 0.036 0.907 0.001 0.001 31 A 0.001 0.004 0.810 0.002 0.001 0.001 0.001 0.001 0.059 0.088 0.004 0.014 0.017 32 R 0.005 0.008 0.295 0.012 0.001 0.001 0.019 0.009 0.523 0.061 0.002 0.024 0.041 33 L 0.007 0.001 0.029 0.002 0.001 0.001 0.094 0.138 0.686 0.003 0.001 0.012 0.026 34 I 0.007 0.001 0.008 0.034 0.001 0.001 0.101 0.553 0.287 0.002 0.001 0.006 0.002 35 V 0.011 0.001 0.002 0.001 0.001 0.001 0.114 0.705 0.163 0.001 0.001 0.002 0.003 36 V 0.020 0.001 0.004 0.004 0.001 0.001 0.119 0.749 0.099 0.001 0.001 0.002 0.003 37 H 0.048 0.001 0.011 0.002 0.001 0.001 0.180 0.482 0.255 0.001 0.001 0.015 0.006 38 A 0.034 0.001 0.087 0.006 0.001 0.001 0.087 0.336 0.391 0.006 0.001 0.008 0.042 39 Y 0.017 0.009 0.349 0.011 0.002 0.001 0.030 0.053 0.377 0.070 0.006 0.044 0.030 40 E 0.001 0.007 0.570 0.009 0.003 0.001 0.001 0.003 0.085 0.268 0.012 0.016 0.024 41 P 0.001 0.017 0.591 0.004 0.015 0.004 0.001 0.001 0.018 0.263 0.069 0.003 0.017 42 V 0.001 0.025 0.609 0.002 0.027 0.010 0.001 0.001 0.005 0.252 0.062 0.005 0.003 43 P 0.001 0.015 0.410 0.001 0.097 0.031 0.001 0.001 0.002 0.269 0.166 0.001 0.007 44 D 0.001 0.020 0.381 0.001 0.131 0.058 0.001 0.001 0.003 0.187 0.210 0.005 0.005 45 Y 0.001 0.040 0.340 0.001 0.122 0.073 0.001 0.001 0.003 0.216 0.186 0.005 0.011 46 L 0.001 0.032 0.281 0.001 0.075 0.085 0.001 0.001 0.002 0.169 0.343 0.004 0.007 47 G 0.001 0.015 0.376 0.001 0.034 0.087 0.001 0.001 0.002 0.272 0.203 0.004 0.005 48 E 0.001 0.009 0.450 0.001 0.021 0.190 0.001 0.001 0.001 0.261 0.062 0.002 0.003 49 P 0.001 0.008 0.214 0.001 0.030 0.609 0.001 0.001 0.001 0.050 0.084 0.001 0.002 50 F 0.001 0.009 0.106 0.001 0.028 0.764 0.001 0.001 0.001 0.032 0.056 0.001 0.002 51 F 0.001 0.002 0.056 0.001 0.016 0.888 0.001 0.001 0.001 0.018 0.018 0.001 0.001 52 E 0.001 0.001 0.005 0.001 0.002 0.986 0.001 0.001 0.001 0.002 0.004 0.001 0.001 53 E 0.001 0.001 0.002 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.004 0.001 0.001 54 A 0.001 0.001 0.003 0.001 0.002 0.988 0.001 0.001 0.001 0.001 0.006 0.001 0.001 55 L 0.001 0.001 0.003 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.005 0.001 0.001 56 R 0.001 0.001 0.002 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.004 0.001 0.001 57 R 0.001 0.001 0.003 0.001 0.001 0.985 0.001 0.001 0.001 0.001 0.010 0.001 0.001 58 R 0.001 0.001 0.005 0.001 0.001 0.980 0.001 0.001 0.001 0.002 0.012 0.001 0.001 59 L 0.001 0.001 0.003 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.003 0.001 0.001 60 E 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 61 R 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 62 A 0.001 0.001 0.002 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.006 0.001 0.001 63 E 0.001 0.001 0.002 0.001 0.001 0.989 0.001 0.001 0.001 0.002 0.006 0.001 0.001 64 G 0.001 0.001 0.002 0.001 0.001 0.987 0.001 0.001 0.001 0.001 0.009 0.001 0.001 65 V 0.001 0.001 0.002 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.005 0.001 0.001 66 L 0.001 0.001 0.002 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.001 0.001 0.001 67 E 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 68 E 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 69 A 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 70 R 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.004 0.001 0.001 71 A 0.001 0.001 0.001 0.001 0.003 0.955 0.001 0.001 0.001 0.001 0.041 0.001 0.001 72 L 0.001 0.001 0.003 0.001 0.009 0.808 0.001 0.001 0.001 0.003 0.176 0.001 0.001 73 T 0.001 0.001 0.024 0.001 0.014 0.314 0.001 0.001 0.001 0.020 0.627 0.001 0.001 74 G 0.001 0.002 0.108 0.001 0.012 0.013 0.001 0.001 0.001 0.079 0.786 0.001 0.001 75 V 0.001 0.003 0.858 0.001 0.001 0.001 0.001 0.001 0.001 0.133 0.003 0.001 0.001 76 P 0.001 0.010 0.957 0.001 0.001 0.001 0.001 0.001 0.002 0.018 0.003 0.001 0.007 77 K 0.001 0.033 0.416 0.012 0.262 0.028 0.002 0.001 0.041 0.053 0.093 0.010 0.048 78 E 0.003 0.004 0.123 0.154 0.331 0.041 0.004 0.003 0.085 0.141 0.050 0.032 0.028 79 D 0.012 0.004 0.088 0.052 0.229 0.093 0.014 0.011 0.240 0.044 0.020 0.066 0.126 80 A 0.017 0.006 0.026 0.018 0.009 0.069 0.021 0.046 0.597 0.015 0.004 0.052 0.121 81 L 0.038 0.014 0.021 0.017 0.002 0.032 0.042 0.085 0.569 0.004 0.001 0.099 0.078 82 L 0.048 0.010 0.053 0.013 0.002 0.054 0.038 0.128 0.473 0.005 0.005 0.037 0.134 83 L 0.067 0.013 0.194 0.022 0.010 0.100 0.033 0.025 0.143 0.039 0.078 0.134 0.141 84 E 0.002 0.009 0.090 0.006 0.012 0.040 0.002 0.002 0.014 0.097 0.684 0.014 0.027 85 G 0.001 0.004 0.196 0.002 0.002 0.006 0.001 0.001 0.002 0.420 0.358 0.006 0.004 86 V 0.001 0.019 0.707 0.001 0.001 0.008 0.001 0.001 0.001 0.240 0.005 0.005 0.014 87 P 0.001 0.009 0.077 0.001 0.011 0.838 0.001 0.001 0.001 0.031 0.028 0.001 0.006 88 A 0.001 0.001 0.002 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.001 0.001 0.001 89 E 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 90 A 0.001 0.001 0.002 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.001 0.001 0.001 91 I 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 92 L 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 93 Q 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 94 A 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 95 A 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.003 0.001 0.001 96 R 0.001 0.001 0.001 0.001 0.002 0.967 0.001 0.001 0.001 0.001 0.029 0.001 0.001 97 A 0.001 0.001 0.002 0.001 0.004 0.815 0.001 0.001 0.001 0.002 0.177 0.001 0.001 98 E 0.001 0.001 0.007 0.001 0.007 0.270 0.001 0.001 0.001 0.018 0.697 0.001 0.001 99 K 0.001 0.003 0.180 0.001 0.015 0.018 0.001 0.001 0.002 0.031 0.750 0.001 0.001 100 A 0.001 0.001 0.936 0.001 0.001 0.001 0.001 0.001 0.025 0.034 0.001 0.001 0.001 101 D 0.001 0.001 0.153 0.070 0.004 0.001 0.001 0.002 0.021 0.741 0.005 0.002 0.001 102 L 0.001 0.001 0.005 0.002 0.001 0.001 0.017 0.765 0.200 0.003 0.001 0.002 0.003 103 I 0.001 0.001 0.001 0.001 0.001 0.001 0.019 0.959 0.020 0.001 0.001 0.001 0.001 104 V 0.002 0.001 0.001 0.001 0.001 0.001 0.025 0.927 0.043 0.001 0.001 0.001 0.001 105 M 0.003 0.001 0.017 0.001 0.001 0.001 0.012 0.702 0.260 0.001 0.001 0.001 0.002 106 G 0.002 0.005 0.307 0.004 0.004 0.002 0.006 0.114 0.438 0.076 0.024 0.006 0.011 107 T 0.002 0.010 0.465 0.014 0.018 0.008 0.002 0.009 0.109 0.256 0.083 0.005 0.020 108 R 0.001 0.020 0.230 0.002 0.061 0.020 0.001 0.003 0.034 0.341 0.273 0.009 0.006 109 G 0.001 0.022 0.275 0.002 0.069 0.028 0.001 0.002 0.009 0.308 0.265 0.007 0.013 110 L 0.001 0.017 0.282 0.002 0.097 0.063 0.001 0.001 0.005 0.275 0.238 0.008 0.010 111 G 0.001 0.012 0.257 0.002 0.137 0.136 0.001 0.001 0.002 0.149 0.285 0.006 0.010 112 A 0.003 0.033 0.221 0.002 0.118 0.261 0.001 0.001 0.005 0.114 0.216 0.006 0.018 113 L 0.004 0.028 0.104 0.003 0.152 0.483 0.001 0.001 0.004 0.034 0.167 0.006 0.012 114 G 0.002 0.005 0.069 0.006 0.143 0.635 0.001 0.001 0.002 0.051 0.075 0.004 0.006 115 S 0.003 0.003 0.033 0.004 0.125 0.704 0.001 0.003 0.005 0.044 0.062 0.005 0.008 116 L 0.005 0.005 0.026 0.001 0.070 0.784 0.003 0.007 0.008 0.020 0.055 0.004 0.011 117 F 0.009 0.013 0.041 0.001 0.029 0.767 0.004 0.010 0.012 0.025 0.072 0.008 0.009 118 L 0.003 0.015 0.077 0.003 0.024 0.644 0.002 0.007 0.011 0.043 0.153 0.009 0.010 119 G 0.002 0.007 0.141 0.003 0.014 0.406 0.001 0.002 0.006 0.171 0.235 0.007 0.006 120 S 0.001 0.008 0.257 0.001 0.008 0.523 0.001 0.001 0.003 0.131 0.061 0.002 0.006 121 Q 0.001 0.003 0.030 0.001 0.009 0.915 0.001 0.001 0.001 0.015 0.026 0.001 0.001 122 S 0.001 0.001 0.008 0.001 0.007 0.969 0.001 0.001 0.001 0.003 0.009 0.001 0.001 123 Q 0.001 0.001 0.005 0.001 0.005 0.981 0.001 0.001 0.001 0.003 0.004 0.001 0.001 124 R 0.001 0.001 0.003 0.001 0.005 0.983 0.001 0.001 0.001 0.001 0.004 0.001 0.001 125 V 0.001 0.001 0.002 0.001 0.004 0.983 0.001 0.001 0.001 0.001 0.007 0.001 0.001 126 V 0.001 0.001 0.002 0.001 0.007 0.963 0.001 0.001 0.001 0.002 0.023 0.001 0.001 127 A 0.001 0.002 0.007 0.001 0.021 0.858 0.001 0.001 0.001 0.008 0.098 0.001 0.002 128 E 0.001 0.005 0.067 0.001 0.037 0.505 0.001 0.001 0.002 0.059 0.317 0.001 0.002 129 A 0.001 0.007 0.463 0.001 0.008 0.037 0.001 0.001 0.008 0.326 0.137 0.007 0.004 130 P 0.001 0.005 0.620 0.016 0.005 0.001 0.001 0.001 0.004 0.150 0.192 0.001 0.005 131 C 0.001 0.006 0.438 0.004 0.001 0.001 0.001 0.002 0.038 0.441 0.005 0.058 0.004 132 P 0.008 0.003 0.615 0.088 0.003 0.001 0.012 0.013 0.088 0.109 0.009 0.003 0.048 133 V 0.064 0.004 0.021 0.007 0.001 0.001 0.218 0.354 0.270 0.006 0.001 0.036 0.019 134 L 0.088 0.001 0.007 0.003 0.001 0.001 0.260 0.439 0.171 0.001 0.001 0.018 0.011 135 L 0.118 0.001 0.021 0.001 0.001 0.001 0.240 0.310 0.264 0.001 0.001 0.010 0.033 136 V 0.042 0.003 0.200 0.011 0.001 0.001 0.035 0.045 0.416 0.013 0.001 0.211 0.025 137 R 0.002 0.005 0.649 0.002 0.001 0.001 0.001 0.002 0.185 0.020 0.001 0.007 0.126