# TARGET T0275 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0275.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 1062 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 M 0.005 0.001 0.001 0.001 0.003 0.001 0.989 2 F 0.068 0.016 0.003 0.001 0.010 0.005 0.897 3 K 0.259 0.006 0.006 0.001 0.162 0.014 0.553 4 T 0.874 0.001 0.004 0.001 0.033 0.004 0.084 5 I 0.982 0.001 0.001 0.001 0.001 0.001 0.016 6 L 0.996 0.001 0.001 0.001 0.001 0.001 0.003 7 L 0.991 0.001 0.001 0.001 0.001 0.001 0.007 8 A 0.904 0.001 0.001 0.001 0.004 0.002 0.088 9 Y 0.592 0.007 0.002 0.001 0.097 0.028 0.273 10 D 0.194 0.030 0.005 0.003 0.307 0.137 0.324 11 G 0.030 0.006 0.004 0.003 0.493 0.142 0.322 12 S 0.013 0.012 0.008 0.028 0.314 0.045 0.580 13 E 0.001 0.001 0.043 0.803 0.023 0.119 0.010 14 H 0.001 0.001 0.032 0.874 0.006 0.074 0.011 15 A 0.001 0.001 0.010 0.963 0.002 0.012 0.013 16 R 0.001 0.001 0.002 0.992 0.001 0.003 0.002 17 R 0.001 0.001 0.001 0.993 0.001 0.003 0.001 18 A 0.001 0.001 0.001 0.994 0.001 0.003 0.001 19 A 0.001 0.001 0.001 0.998 0.001 0.001 0.001 20 E 0.001 0.001 0.001 0.999 0.001 0.001 0.001 21 V 0.001 0.001 0.001 0.998 0.001 0.002 0.001 22 A 0.001 0.001 0.001 0.995 0.001 0.004 0.001 23 K 0.001 0.001 0.001 0.997 0.001 0.003 0.001 24 A 0.001 0.001 0.001 0.996 0.001 0.004 0.001 25 E 0.001 0.001 0.001 0.995 0.001 0.004 0.001 26 A 0.001 0.001 0.001 0.992 0.001 0.004 0.001 27 E 0.001 0.001 0.004 0.979 0.001 0.015 0.001 28 A 0.001 0.001 0.008 0.931 0.005 0.052 0.002 29 H 0.001 0.001 0.010 0.210 0.015 0.760 0.005 30 G 0.001 0.001 0.001 0.001 0.012 0.964 0.021 31 A 0.032 0.001 0.001 0.001 0.021 0.002 0.944 32 R 0.716 0.005 0.001 0.001 0.070 0.004 0.204 33 L 0.979 0.001 0.001 0.001 0.001 0.001 0.020 34 I 0.993 0.001 0.001 0.001 0.002 0.001 0.005 35 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 36 V 0.991 0.001 0.001 0.001 0.001 0.001 0.009 37 H 0.982 0.001 0.001 0.001 0.001 0.001 0.016 38 A 0.784 0.002 0.001 0.001 0.011 0.002 0.201 39 Y 0.476 0.008 0.003 0.001 0.133 0.011 0.370 40 E 0.196 0.009 0.003 0.001 0.325 0.009 0.458 41 P 0.048 0.021 0.008 0.001 0.182 0.029 0.711 42 V 0.009 0.011 0.007 0.001 0.150 0.015 0.807 43 P 0.006 0.009 0.078 0.008 0.162 0.178 0.560 44 D 0.007 0.008 0.133 0.017 0.161 0.271 0.403 45 Y 0.010 0.009 0.134 0.022 0.259 0.194 0.373 46 L 0.013 0.028 0.083 0.036 0.203 0.296 0.341 47 G 0.011 0.014 0.050 0.039 0.294 0.200 0.392 48 E 0.009 0.006 0.034 0.124 0.240 0.037 0.550 49 P 0.006 0.009 0.048 0.573 0.076 0.070 0.217 50 F 0.006 0.015 0.034 0.695 0.038 0.057 0.154 51 F 0.001 0.002 0.012 0.922 0.006 0.013 0.043 52 E 0.001 0.001 0.005 0.976 0.002 0.005 0.011 53 E 0.001 0.001 0.004 0.985 0.002 0.005 0.004 54 A 0.001 0.001 0.003 0.981 0.002 0.008 0.005 55 L 0.001 0.001 0.001 0.979 0.001 0.015 0.003 56 R 0.001 0.001 0.001 0.985 0.001 0.009 0.003 57 R 0.001 0.001 0.002 0.983 0.001 0.011 0.003 58 R 0.001 0.001 0.002 0.968 0.002 0.021 0.007 59 L 0.001 0.001 0.002 0.973 0.002 0.017 0.006 60 E 0.001 0.001 0.002 0.981 0.001 0.013 0.002 61 R 0.001 0.001 0.003 0.967 0.002 0.020 0.008 62 A 0.001 0.001 0.002 0.965 0.003 0.018 0.010 63 E 0.001 0.001 0.002 0.985 0.001 0.010 0.002 64 G 0.001 0.001 0.002 0.986 0.001 0.010 0.001 65 V 0.001 0.001 0.002 0.983 0.001 0.009 0.005 66 L 0.001 0.001 0.001 0.991 0.001 0.005 0.001 67 E 0.001 0.001 0.001 0.996 0.001 0.002 0.001 68 E 0.001 0.001 0.001 0.996 0.001 0.003 0.001 69 A 0.001 0.001 0.001 0.995 0.001 0.003 0.001 70 R 0.001 0.001 0.001 0.995 0.001 0.003 0.001 71 A 0.001 0.001 0.002 0.976 0.001 0.021 0.001 72 L 0.001 0.001 0.004 0.903 0.004 0.084 0.004 73 T 0.001 0.001 0.005 0.477 0.019 0.486 0.013 74 G 0.002 0.003 0.005 0.045 0.098 0.642 0.207 75 V 0.007 0.003 0.001 0.003 0.083 0.001 0.903 76 P 0.034 0.008 0.002 0.004 0.019 0.003 0.931 77 K 0.278 0.058 0.050 0.073 0.109 0.065 0.368 78 E 0.446 0.009 0.064 0.028 0.147 0.071 0.235 79 D 0.630 0.008 0.036 0.022 0.055 0.021 0.228 80 A 0.808 0.005 0.008 0.031 0.029 0.008 0.111 81 L 0.906 0.008 0.005 0.028 0.008 0.005 0.040 82 L 0.902 0.006 0.002 0.032 0.006 0.009 0.044 83 L 0.782 0.013 0.003 0.046 0.018 0.029 0.109 84 E 0.345 0.009 0.004 0.061 0.112 0.302 0.168 85 G 0.041 0.003 0.003 0.059 0.402 0.305 0.188 86 V 0.045 0.013 0.001 0.146 0.319 0.018 0.458 87 P 0.011 0.007 0.005 0.814 0.015 0.035 0.113 88 A 0.002 0.001 0.002 0.968 0.004 0.007 0.016 89 E 0.001 0.001 0.001 0.994 0.001 0.001 0.003 90 A 0.001 0.001 0.001 0.998 0.001 0.001 0.001 91 I 0.001 0.001 0.001 0.996 0.001 0.002 0.001 92 L 0.001 0.001 0.001 0.998 0.001 0.002 0.001 93 Q 0.001 0.001 0.001 0.998 0.001 0.001 0.001 94 A 0.001 0.001 0.001 0.998 0.001 0.002 0.001 95 A 0.001 0.001 0.001 0.997 0.001 0.002 0.001 96 R 0.001 0.001 0.001 0.984 0.001 0.014 0.001 97 A 0.001 0.001 0.007 0.890 0.004 0.096 0.002 98 E 0.001 0.001 0.006 0.364 0.010 0.615 0.005 99 K 0.001 0.001 0.005 0.014 0.032 0.879 0.066 100 A 0.021 0.002 0.002 0.001 0.054 0.007 0.914 101 D 0.172 0.001 0.003 0.001 0.619 0.008 0.198 102 L 0.987 0.001 0.001 0.001 0.002 0.001 0.008 103 I 0.998 0.001 0.001 0.001 0.001 0.001 0.002 104 V 0.998 0.001 0.001 0.001 0.001 0.001 0.001 105 M 0.950 0.001 0.001 0.001 0.002 0.001 0.046 106 G 0.560 0.002 0.002 0.001 0.057 0.014 0.364 107 T 0.205 0.018 0.016 0.005 0.280 0.051 0.424 108 R 0.073 0.025 0.041 0.010 0.413 0.131 0.308 109 G 0.043 0.011 0.049 0.017 0.371 0.183 0.325 110 L 0.029 0.016 0.102 0.100 0.272 0.182 0.299 111 G 0.026 0.011 0.135 0.150 0.250 0.229 0.198 112 A 0.028 0.013 0.174 0.242 0.134 0.236 0.173 113 L 0.025 0.013 0.194 0.467 0.041 0.151 0.109 114 G 0.027 0.006 0.194 0.469 0.066 0.132 0.105 115 S 0.041 0.003 0.159 0.560 0.043 0.132 0.061 116 L 0.100 0.014 0.117 0.543 0.049 0.096 0.082 117 F 0.134 0.045 0.079 0.425 0.071 0.152 0.094 118 L 0.069 0.013 0.042 0.294 0.074 0.386 0.122 119 G 0.039 0.008 0.020 0.130 0.262 0.280 0.262 120 S 0.031 0.026 0.018 0.213 0.224 0.101 0.387 121 Q 0.010 0.008 0.029 0.712 0.047 0.076 0.119 122 S 0.001 0.001 0.011 0.964 0.003 0.010 0.011 123 Q 0.001 0.001 0.007 0.984 0.002 0.002 0.004 124 R 0.001 0.001 0.008 0.988 0.001 0.002 0.001 125 V 0.001 0.001 0.009 0.980 0.001 0.007 0.001 126 V 0.002 0.001 0.036 0.927 0.002 0.032 0.001 127 A 0.001 0.001 0.047 0.730 0.004 0.215 0.002 128 E 0.001 0.001 0.098 0.353 0.010 0.526 0.011 129 A 0.013 0.005 0.017 0.030 0.455 0.053 0.426 130 P 0.017 0.015 0.014 0.002 0.290 0.047 0.616 131 C 0.086 0.009 0.001 0.001 0.602 0.005 0.297 132 P 0.234 0.001 0.001 0.001 0.275 0.015 0.474 133 V 0.972 0.001 0.001 0.001 0.007 0.002 0.017 134 L 0.995 0.001 0.001 0.001 0.001 0.001 0.004 135 L 0.996 0.001 0.001 0.001 0.001 0.001 0.003 136 V 0.943 0.004 0.001 0.001 0.001 0.001 0.052 137 R 0.145 0.001 0.001 0.001 0.014 0.002 0.839