# List of top-scoring protein chains for T0275.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1mjhA 162 1.44e-19 1mjhA c.26.2.4 31639 1tq8A 163 2.28e-16 1jmvA 141 5.95e-16 c.26.2.4 66897 1q77A 138 1.72e-06 c.26.2.4 -6639 1g1yA 585 5.88e-03 1bvzA b.1.18.2 60210 b.71.1.1 60211 c.1.8.1 60212 1ji2A 585 1.34e-02 b.1.18.2 71672 b.71.1.1 71673 c.1.8.1 71674 1jf6A 585 1.46e-02 b.1.18.2 71650 b.71.1.1 71651 c.1.8.1 71652 1jl8A 585 1.83e-02 b.1.18.2 63163 b.71.1.1 63164 c.1.8.1 63165 1jf5A 585 1.85e-02 b.1.18.2 71644 b.71.1.1 71645 c.1.8.1 71646 1aj2 282 3.58e-02 1aj2 c.1.21.1 29665 1np7A 489 8.91e-02 a.99.1.1 80677 c.28.1.1 80678 1k2cA 99 1.71e-01 b.50.1.1 72008 1mrxA 99 1.92e-01 b.50.1.1 -4288 1gnmA 99 2.24e-01 1hvc b.50.1.1 26672 1ru8A 232 2.39e-01 c.26.2.1 -6635 1d4yA 99 2.52e-01 1hvc b.50.1.1 26549 1gnnA 99 2.60e-01 1fmb b.50.1.1 26676 1aaqA 99 2.65e-01 1fmb b.50.1.1 26688 1eh9A 558 2.85e-01 1ehaA b.1.18.2 21858 b.71.1.1 27785 c.1.8.1 28772 1owlA 484 2.87e-01 a.99.1.1 -1296 c.28.1.1 -6646 1ehaA 558 3.23e-01 1ehaA b.1.18.2 21859 b.71.1.1 27786 c.1.8.1 28773 1o13A 136 3.77e-01 c.55.5.1 80762 1a94A 99 3.91e-01 1fmb b.50.1.1 26599 1s6sA 99 3.96e-01 1k1tA 99 3.97e-01 b.50.1.1 71995 1s65A 99 4.04e-01 1ffiC 99 4.35e-01 1hvc b.50.1.1 59808 2ng1 293 4.43e-01 1ng1 a.24.13.1 16962 c.37.1.10 32273 1ffh 294 4.43e-01 1ng1 a.24.13.1 16960 c.37.1.10 32271 1rj9B 300 4.46e-01 a.24.13.1 -621 c.37.1.10 -7119 1ng1 294 4.79e-01 1ng1 a.24.13.1 16961 c.37.1.10 32272 1ls1A 295 4.80e-01 a.24.13.1 78170 c.37.1.10 78171 1jpnA 296 4.80e-01 a.24.13.1 67039 c.37.1.10 67040 1o87A 297 4.80e-01 a.24.13.1 -619 c.37.1.10 -7117 1q9pA 95 4.88e-01 b.50.1.1 -4298 1bdqA 99 4.99e-01 1fmb b.50.1.1 26686 1sduA 99 5.04e-01 1s6gA 99 5.12e-01 1ebkC 99 5.16e-01 1hvc b.50.1.1 26610 1k2bA 99 5.47e-01 b.50.1.1 72006 1lzqA 99 5.47e-01 b.50.1.1 84741 2ffhA 425 5.52e-01 1ng1 a.24.13.1 16965 a.36.1.1 17122 c.37.1.10 32276 1fg6C 99 5.56e-01 1hvc b.50.1.1 59817 1iziA 99 5.61e-01 b.50.1.1 76990 1tcxA 99 6.59e-01 1hvc b.50.1.1 26748 1bdlA 99 7.44e-01 1fmb b.50.1.1 26705 1d4sA 99 7.96e-01 1hvc b.50.1.1 26692 1bwbA 99 8.06e-01 1fmb b.50.1.1 26517 1hvc 203 8.19e-01 1hvc b.50.1.1 26614 1bdrA 99 8.41e-01 1fmb b.50.1.1 26702 1merA 99 8.49e-01 1hvc b.50.1.1 26523 1hvsA 99 8.77e-01 1fmb b.50.1.1 26597 1g6lA 203 9.82e-01 1hvc b.50.1.1 26559 b.50.1.1 26560 1metA 99 1.03e+00 1fmb b.50.1.1 26593 1k1uA 99 1.03e+00 b.50.1.1 71997 1dazC 99 1.04e+00 1hvc b.50.1.1 26501 1nh0A 99 1.05e+00 b.50.1.1 -4299 1hefE 99 1.05e+00 1fmb b.50.1.1 26637 3tlhA 99 1.06e+00 1hvc b.50.1.1 26609 1hivA 99 1.06e+00 1fmb b.50.1.1 26555 1lv1A 203 1.07e+00 b.50.1.1 74273 b.50.1.1 74274 1a9mA 99 1.08e+00 1hvc b.50.1.1 26642 1proA 99 1.08e+00 1fmb b.50.1.1 26509 1gefA 123 1.11e+00 1gefA c.52.1.18 60465 1hvhA 99 1.21e+00 1hvc b.50.1.1 26585 1odxA 99 1.33e+00 1fmb b.50.1.1 26577 1odyB 99 1.36e+00 1fmb b.50.1.1 26582 1r46A 398 1.45e+00 b.71.1.1 -4658 c.1.8.1 -5286 1bgvA 449 1.46e+00 1k89 c.2.1.7 30217 c.58.1.1 33865 1k89 449 1.48e+00 1k89 c.2.1.7 30218 c.58.1.1 33866 1odyA 99 1.54e+00 1hvc b.50.1.1 26581 1axaA 99 1.54e+00 1hvc b.50.1.1 26633 1nfgA 457 1.56e+00 b.92.1.3 85632 c.1.9.6 85633 1aup 449 1.57e+00 1k89 c.2.1.7 30222 c.58.1.1 33870 1ecfA 504 1.76e+00 1ecfB c.61.1.1 34053 d.153.1.1 41820 1gkrA 458 1.78e+00 b.92.1.3 70251 c.1.9.6 70252 1bmtA 246 1.94e+00 1bmtA a.46.1.1 17757 c.23.6.1 31235 1nmoA 247 2.14e+00 unknown_sccs -8746 1fb7A 99 2.16e+00 1hvc b.50.1.1 26683 1i2pA 316 2.58e+00 1onrA c.1.10.1 61576 1i2nA 316 2.71e+00 1onrA c.1.10.1 61572 1o4vA 183 2.78e+00 c.23.8.1 86628 1onrA 316 3.14e+00 1onrA c.1.10.1 29169 1j0jA 588 3.17e+00 b.1.18.2 77039 b.71.1.1 77040 c.1.8.1 77041 1k6vA 99 3.18e+00 b.50.1.1 68234 1dppA 507 3.18e+00 1dpe c.94.1.1 35800 1ucwA 317 3.31e+00 1onrA c.1.10.1 29171 1dpe 507 3.34e+00 1dpe c.94.1.1 35799 1oi2A 366 3.58e+00 c.32.1.2 87039 d.79.2.2 87040 1i2oA 316 3.84e+00 1onrA c.1.10.1 61574 1i2rA 316 3.88e+00 1onrA c.1.10.1 61580 1bez 310 3.98e+00 1b6g c.69.1.8 34666 1b6g 310 3.98e+00 1b6g c.69.1.8 34661 1ede 310 3.99e+00 1b6g c.69.1.8 34662 1hdeA 310 4.14e+00 1b6g c.69.1.8 34675 1mioB 458 4.23e+00 1qguB c.92.2.3 35602 1i2qA 316 4.23e+00 1onrA c.1.10.1 61578 1pqwA 198 4.31e+00 c.2.1.1 88278 1qczA 169 4.73e+00 1qczA c.23.8.1 31276 1d7aA 161 4.73e+00 1qczA c.23.8.1 31277 1efvB 255 4.82e+00 1efvB c.26.2.3 31634 1peeA 180 4.89e+00 1f3z 161 4.98e+00 1gpr b.84.3.1 28273 1mjoA 104 5.12e+00 1cmbA unknown_sccs 17466 1tk9A 188 5.12e+00 1r89A 437 5.22e+00 unknown_sccs -1147 unknown_sccs -9801 unknown_sccs -10061 2f3gA 168 5.42e+00 1gpr b.84.3.1 28270 1cmcA 104 5.43e+00 1cmbA unknown_sccs 17462 1qgeD 222 6.41e+00 1cvl c.69.1.18 34773 1mnmA 100 6.58e+00 1mnmA d.88.1.1 40232 1mwmA 320 6.58e+00 c.55.1.1 79580 c.55.1.1 79581 1lf1A 308 6.87e+00 c.1.8.3 73877 1b74A 254 7.40e+00 1b74A c.78.2.1 35264 c.78.2.1 35265 1b8gA 429 7.48e+00 1b8gA c.67.1.4 34499 1m7yA 435 7.64e+00 c.67.1.4 78761 1k7yA 577 7.75e+00 a.46.1.1 68272 c.23.6.1 68273 d.173.1.1 68274 1b6jA 99 8.01e+00 1hvc b.50.1.1 26567 1d2eA 397 8.08e+00 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 1ni5A 433 8.13e+00 c.26.2.5 80533 d.229.1.1 80534 1j0hA 588 8.65e+00 b.1.18.2 77027 b.71.1.1 77028 c.1.8.1 77029 1oeyJ 107 8.66e+00 d.15.2.2 -9168 1gpmA 525 8.69e+00 1gpmA c.23.16.1 31405 c.26.2.1 31608 d.52.2.1 38826 1mtrA 99 9.11e+00 1fmb b.50.1.1 26507 1o0pA 104 9.27e+00 d.58.7.1 86535 1o6bA 169 9.44e+00 c.26.1.3 -6613 1cvl 319 9.49e+00 1cvl c.69.1.18 34786 1tahA 318 9.61e+00 1cvl c.69.1.18 34775 1mt7A 99 1.03e+01 b.50.1.1 79448 1ehyA 294 1.03e+01 1ehyA c.69.1.11 34693 1khtA 192 1.04e+01 c.37.1.1 84401 1ujsA 88 1.04e+01 a.14.1.1 -463 1lhpA 312 1.05e+01 c.72.1.5 77960 1kzkA 99 1.06e+01 b.50.1.1 73371 1aidA 99 1.07e+01 1fmb b.50.1.1 26591 1gbnA 402 1.11e+01 2dkb c.67.1.4 34455 1r03A 182 1.12e+01 1pm1X 180 1.13e+01 2oatA 439 1.14e+01 2dkb c.67.1.4 34452 1b1a 137 1.17e+01 1be1 c.23.6.1 31242 1ccwA 137 1.17e+01 1be1 c.23.6.1 31238 1jx4A 352 1.19e+01 unknown_sccs -10188 unknown_sccs -11898 1pjaA 302 1.19e+01 c.69.1.13 -8348 1vhxA 150 1.21e+01 unknown_sccs -7663 1irxA 523 1.22e+01 a.97.1.2 71378 c.26.1.1 71379 1iv0A 98 1.30e+01 unknown_sccs -7667 7a3hA 303 1.31e+01 7a3hA c.1.8.3 28817 1a3h 300 1.31e+01 7a3hA c.1.8.3 28819 1h5vA 304 1.31e+01 c.1.8.3 70898 1qi2A 305 1.31e+01 7a3hA c.1.8.3 28824 1kjgA 99 1.32e+01 b.50.1.1 72597 1mkmA 249 1.32e+01 a.4.5.33 79242 d.110.2.2 79243 1vkmA 297 1.32e+01 1mtbA 99 1.34e+01 b.50.1.1 79454 1ea9C 583 1.38e+01 b.1.18.2 70087 b.71.1.1 70088 c.1.8.1 70089 1nofA 383 1.41e+01 b.71.1.2 -4668 c.1.8.3 -5339 1ntoA 347 1.55e+01 b.35.1.2 -3669 c.2.1.1 -5693 1jqbA 351 1.60e+01 b.35.1.2 77151 c.2.1.1 77152 1ujpA 271 1.64e+01 c.1.2.4 -5177 1dwqA 262 1.65e+01 1qj4A c.69.1.20 34808 1ujnA 348 1.69e+01 e.22.1.1 -11998 1pfkA 320 1.70e+01 3pfk c.89.1.1 35575 2pfkC 320 1.70e+01 3pfk c.89.1.1 35579 1ehwA 162 1.70e+01 1npk d.58.6.1 39088 1su8A 636 1.72e+01 e.26.1.2 -12015 1qzuA 206 1.75e+01 c.34.1.1 -6804 1kevA 351 1.75e+01 1pedA b.35.1.2 24749 c.2.1.1 29765 1qahA 136 1.78e+01 d.79.1.1 -10377 1jvbA 347 1.78e+01 b.35.1.2 77181 c.2.1.1 77182 1cfzA 162 1.81e+01 1cfzA c.56.1.1 33754 1vjqA 79 1.81e+01 unknown_sccs -13478 1on0A 158 1.83e+01 d.108.1.1 87095 1ci1A 251 1.83e+01 1amk c.1.1.1 28499 1tcdA 249 1.85e+01 1amk c.1.1.1 28497 1t3eA 421 1.87e+01 1nm3A 241 1.89e+01 c.47.1.1 85866 c.47.1.10 85867 1cc1S 283 1.93e+01 2frvA e.19.1.1 43313 1umdA 367 1.95e+01 c.36.1.11 -6969 1ufhA 180 1.95e+01 d.108.1.1 88485 1riqA 465 1.97e+01 unknown_sccs -1295 d.104.1.1 -10769 1qupA 222 2.00e+01 1qupA b.1.8.1 22301 d.58.17.1 39352 1ld9A 268 2.01e+01 1agdA b.1.1.2 20835 d.19.1.1 38307 1ldpH 272 2.05e+01 1agdA b.1.1.2 20839 d.19.1.1 38309 1jk9B 249 2.06e+01 b.1.8.1 63150 d.58.17.1 63151 1nhr 447 2.06e+01 1nhp c.3.1.5 30553 c.3.1.5 30554 d.87.1.1 40198 8acn 754 2.10e+01 1amj c.8.2.1 30724 c.83.1.1 35400 1cliA 345 2.12e+01 1cliA d.79.4.1 39816 d.139.1.1 41459 1a1s 314 2.14e+01 1othA c.78.1.1 35258 c.78.1.1 35259 1pvvA 315 2.15e+01 c.78.1.1 -8495 c.78.1.1 -8496 1nis 754 2.15e+01 1amj c.8.2.1 30730 c.83.1.1 35406 1nthA 458 2.17e+01 c.1.25.1 80730 2a0b 125 2.21e+01 2a0b a.24.10.1 16630 1tif 78 2.25e+01 1tif d.15.8.1 37836 1l1nA 183 2.30e+01 b.47.1.4 73476 1o5xA 248 2.33e+01 c.1.1.1 -5157 1a7j 290 2.40e+01 1a7j c.37.1.6 31952 4lipD 320 2.42e+01 1cvl c.69.1.18 34783 1eb8A 262 2.45e+01 c.69.1.20 64896 7acn 754 2.47e+01 1amj c.8.2.1 30717 c.83.1.1 35393 1oniA 138 2.48e+01 d.79.1.1 87144 1dwoA 262 2.48e+01 1qj4A c.69.1.20 34804 1nhq 447 2.48e+01 1nhp c.3.1.5 30551 c.3.1.5 30552 d.87.1.1 40197 1b0mA 753 2.49e+01 1amj c.8.2.1 30722 c.83.1.1 35398 1c96A 753 2.49e+01 1amj c.8.2.1 30727 c.83.1.1 35403 1c97A 753 2.51e+01 1amj c.8.2.1 30731 c.83.1.1 35407 1b0jA 754 2.51e+01 1amj c.8.2.1 30719 c.83.1.1 35395 1q57A 503 2.55e+01 c.37.1.11 -7131 e.13.1.2 -11987 1tpb1 247 2.57e+01 1amk 1vjdA 416 2.58e+01 c.86.1.1 -8570 1ib2A 349 2.67e+01 1ib2A a.118.1.8 62141 1gv1A 310 2.70e+01 c.2.1.5 65598 d.162.1.1 65599 1i9cA 137 2.72e+01 c.23.6.1 71136 1eqnA 321 2.74e+01 1dd9A e.13.1.1 43256 1dd9A 338 2.79e+01 1dd9A e.13.1.1 43254 1fnmA 691 2.89e+01 1dar b.43.3.1 25709 c.37.1.8 32144 d.14.1.1 37546 d.58.11.1 39302 d.58.11.1 39303 1inlA 296 2.89e+01 c.66.1.17 66220 1tpc1 247 2.92e+01 1amk 1q0sA 259 2.94e+01 c.66.1.28 -8110 1vimA 200 3.00e+01 c.80.1.3 -8532 1npx 447 3.01e+01 1nhp c.3.1.5 30557 c.3.1.5 30558 d.87.1.1 40200 1nhp 447 3.02e+01 1nhp c.3.1.5 30549 c.3.1.5 30550 d.87.1.1 40196 1mioA 533 3.02e+01 1qguA c.92.2.3 35601 1qhoA 686 3.03e+01 1cxlA b.1.18.2 21844 b.3.1.1 22513 b.71.1.1 27751 c.1.8.1 28738 1f8wA 447 3.04e+01 1nhp c.3.1.5 30561 c.3.1.5 30562 d.87.1.1 40202 2a2uA 181 3.06e+01 1mup b.60.1.1 27135 1nmaN 388 3.06e+01 2qwc b.68.1.1 27590 1gviA 588 3.06e+01 b.1.18.2 70604 b.71.1.1 70605 c.1.8.1 70606 1ds1A 324 3.06e+01 1drtA b.82.2.2 28127 1c6yA 99 3.07e+01 1hvc b.50.1.1 26670 1nd4A 264 3.07e+01 d.144.1.6 -11381 1m6jA 261 3.08e+01 c.1.1.1 78693 1ncdN 389 3.09e+01 2qwc b.68.1.1 27589 1l3iA 192 3.09e+01 c.66.1.22 77676 1nhs 447 3.18e+01 1nhp c.3.1.5 30555 c.3.1.5 30556 d.87.1.1 40199 1gvnB 287 3.21e+01 c.37.1.21 76354 1qapA 296 3.21e+01 1qpoA c.1.17.1 29559 d.41.2.1 38595 1dar 691 3.22e+01 1dar b.43.3.1 25707 c.37.1.8 32142 d.14.1.1 37547 d.58.11.1 39300 1q8fA 313 3.23e+01 c.70.1.1 -8358 1nuiA 255 3.26e+01 e.13.1.2 86194 g.41.3.2 86195 1be1 137 3.28e+01 1be1 c.23.6.1 31237 1gqoA 143 3.28e+01 c.23.13.1 76295 1egzA 291 3.33e+01 7a3hA c.1.8.3 28828 1vj1A 363 3.36e+01 b.35.1.2 -3728 c.2.1.1 -5752 1qd9A 124 3.40e+01 1qu9A d.79.1.1 39758 1k1xA 659 3.44e+01 a.8.3.2 84279 b.30.5.8 84280 c.6.2.2 84281 1eh2 106 3.46e+01 1eh2 a.39.1.6 17339 1uouA 474 3.53e+01 a.46.2.1 -951 c.27.1.1 -6642 d.41.3.1 -9715 1o69A 394 3.57e+01 c.67.1.4 -8209 1f8hA 95 3.58e+01 1eh2 a.39.1.6 17336 1tph1 247 3.58e+01 1amk 3csmA 256 3.65e+01 5csmA a.130.1.2 19500 1g73C 121 3.65e+01 1g3fA g.52.1.1 45375 1gm6A 175 3.66e+01 b.60.1.1 70272 1nmbN 470 3.83e+01 2qwc b.68.1.1 27583 1r2rA 248 3.86e+01 c.1.1.1 -5147 1timA 247 3.89e+01 1amk c.1.1.1 28453 1htiA 248 3.90e+01 1amk c.1.1.1 28455