PFRMAT RR TARGET T0275 AUTHOR 4204-4258-2837 REMARK From group SAM-TO4-hand under the direction of REMARK Kevin Karplus. REMARK Project by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network METHOD using 280 inputs. METHOD Input includes separation and sequence length, corrected METHOD mutual information between columns (M. Cline) and METHOD an e-value measure of correlation between columns (K Karplus) METHOD NN: /projects/compbio/experiments/protein-predict/casp6/networks/NN280-240n300.net.28 METHOD Other inputs are from alignments and METHOD secondary predictions from SAM-t2k and SAM-t04 of METHOD University of California, Santa Cruz MODEL 1 MFKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPF FEEALRRRLERAEGVLEEARALTGVPKEDALLLEGVPAEAILQAARAEKA DLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLLVR 11 119 0 8 0.8194 6 100 0 8 0.81855 34 81 0 8 0.81345 7 22 0 8 0.8007 34 100 0 8 0.79475 4 34 0 8 0.782 6 91 0 8 0.77945 8 91 0 8 0.77775 12 109 0 8 0.7735 103 125 0 8 0.7701 9 120 0 8 0.76925 4 100 0 8 0.76755 8 18 0 8 0.76585 8 107 0 8 0.76415 8 95 0 8 0.76075 5 31 0 8 0.76075 105 125 0 8 0.75055 8 103 0 8 0.75055 105 122 0 8 0.74885 8 122 0 8 0.7446 103 129 0 8 0.7395 106 122 0 8 0.73695 9 108 0 8 0.7361 88 125 0 8 0.73525 88 124 0 8 0.7293 4 32 0 8 0.72675 103 131 0 8 0.71995 106 121 0 8 0.71825 102 132 0 8 0.71825 10 120 0 8 0.7174 10 119 0 8 0.7174 8 104 0 8 0.7174 108 122 0 8 0.7157 5 26 0 8 0.71315 36 91 0 8 0.7106 8 36 0 8 0.7089 8 125 0 8 0.7072 5 33 0 8 0.70295 8 113 0 8 0.7021 7 26 0 8 0.7004 4 31 0 8 0.6987 14 108 0 8 0.69445 6 25 0 8 0.69445 8 105 0 8 0.69105 8 87 0 8 0.68935 35 82 0 8 0.6851 2 31 0 8 0.6834 108 120 0 8 0.6817 102 134 0 8 0.6783 9 37 0 8 0.6783 8 19 0 8 0.6749 109 121 0 8 0.6732 6 95 0 8 0.6681 8 37 0 8 0.6664 8 25 0 8 0.6664 3 101 0 8 0.6664 8 21 0 8 0.6647 7 18 0 8 0.6647 10 109 0 8 0.6613 11 120 0 8 0.6562 7 19 0 8 0.6562 4 102 0 8 0.6562 8 90 0 8 0.65025 8 118 0 8 0.64855 34 98 0 8 0.6358 10 108 0 8 0.63325 109 120 0 8 0.62985 9 104 0 8 0.62815 18 107 0 8 0.61795 11 34 0 8 0.61795 107 120 0 8 0.6154 5 25 0 8 0.6137 22 31 0 8 0.612 7 70 0 8 0.612 107 122 0 8 0.60945 105 129 0 8 0.60945 18 35 0 8 0.60945 25 134 0 8 0.60775 8 38 0 8 0.60775 35 107 0 8 0.6035 34 80 0 8 0.6035 18 100 0 8 0.59925 9 19 0 8 0.5967 8 134 0 8 0.5967 10 85 0 8 0.595 87 125 0 8 0.59245 26 102 0 8 0.59245 21 134 0 8 0.59245 109 119 0 8 0.5814 105 119 0 8 0.57715 9 109 0 8 0.57715 106 119 0 8 0.57545 21 31 0 8 0.57035 8 120 0 8 0.56865 6 94 0 8 0.5661 95 125 0 8 0.56185 107 121 0 8 0.5593 22 33 0 8 0.5593 10 107 0 8 0.5593 107 119 0 8 0.55675 6 21 0 8 0.55675 29 132 0 8 0.55505 9 118 0 8 0.55505 9 107 0 8 0.55505 32 79 0 8 0.5525 5 22 0 8 0.54995 15 108 0 8 0.5474 8 35 0 8 0.5474 109 118 0 8 0.5457 92 125 0 8 0.5457 91 125 0 8 0.5457 9 18 0 8 0.5457 8 119 0 8 0.5457 6 26 0 8 0.5457 29 131 0 8 0.5355 10 106 0 8 0.5338 15 107 0 8 0.53125 4 25 0 8 0.53125 9 35 0 8 0.5287 38 90 0 8 0.52615 15 35 0 8 0.52615 2 102 0 8 0.52615 107 118 0 8 0.5219 18 119 0 8 0.5219 9 26 0 8 0.5219 105 121 0 8 0.51935 25 135 0 8 0.5168 9 100 0 8 0.5168 8 33 0 8 0.5168 66 75 0 8 0.51425 9 105 0 8 0.51425 9 131 0 8 0.50915 6 103 0 8 0.50915 92 129 0 8 0.5066 21 135 0 8 0.5066 5 103 0 8 0.50405 2 101 0 8 0.50405 106 120 0 8 0.50235 15 106 0 8 0.50235 95 131 0 8 0.4998 5 101 0 8 0.4998 105 126 0 8 0.4947 35 105 0 8 0.4947 35 95 0 8 0.49215 9 122 0 8 0.49215 9 95 0 8 0.49215 11 110 0 8 0.48705 21 122 0 8 0.4845 108 119 0 8 0.4794 38 105 0 8 0.4794 35 91 0 8 0.47685 6 90 0 8 0.47685 6 36 0 8 0.47685 5 131 0 8 0.4743 87 122 0 8 0.47175 25 102 0 8 0.47175 7 33 0 8 0.47175 11 123 0 8 0.4692 11 108 0 8 0.4692 107 132 0 8 0.4641 34 94 0 8 0.4641 26 133 0 8 0.4641 9 33 0 8 0.4641 12 119 0 8 0.46155 96 130 0 8 0.4539 25 101 0 8 0.4539 4 101 0 8 0.4539 6 87 0 8 0.45135 91 105 0 8 0.4437 92 124 0 8 0.44115 15 105 0 8 0.44115 10 84 0 8 0.43945 21 136 0 8 0.4369 10 121 0 8 0.4369 8 94 0 8 0.4369 108 118 0 8 0.4318 8 100 0 8 0.4318 108 121 0 8 0.42925 35 66 0 8 0.42925 21 82 0 8 0.42925 15 122 0 8 0.42925 110 120 0 8 0.4233 86 108 0 8 0.42075 34 131 0 8 0.4182 11 107 0 8 0.4182 100 134 0 8 0.41565 17 119 0 8 0.4131 12 107 0 8 0.41055 3 102 0 8 0.41055 113 134 0 8 0.40885 39 91 0 8 0.40885 9 91 0 8 0.4063 2 132 0 8 0.4063 31 102 0 8 0.40375 9 136 0 8 0.40375 18 131 0 8 0.4012 3 31 0 8 0.4012 70 125 0 8 0.39865 122 135 0 8 0.3961 35 104 0 8 0.3961 33 131 0 8 0.3961 12 120 0 8 0.3961 110 121 0 8 0.39355 29 134 0 8 0.39355 8 34 0 8 0.38845 6 104 0 8 0.3859 5 129 0 8 0.3859 18 103 0 8 0.38335 85 108 0 8 0.3808 2 134 0 8 0.3808 101 134 0 8 0.3757 11 118 0 8 0.3757 6 102 0 8 0.3757 5 21 0 8 0.3757 26 136 0 8 0.37315 9 117 0 8 0.37315 108 127 0 8 0.3706 35 80 0 8 0.3706 12 108 0 8 0.3706 10 134 0 8 0.3706 5 37 0 8 0.3706 91 103 0 8 0.36805 36 106 0 8 0.36805 10 118 0 8 0.36805 91 133 0 8 0.3655 37 120 0 8 0.3655 22 66 0 8 0.3655 15 129 0 8 0.3655 21 132 0 8 0.36295 100 131 0 8 0.3604 91 100 0 8 0.3604 25 122 0 8 0.3604 8 123 0 8 0.3604 105 120 0 8 0.35785 14 107 0 8 0.35785 11 102 0 8 0.35785 8 88 0 8 0.35785 34 132 0 8 0.3553 22 75 0 8 0.3553 12 118 0 8 0.3553 2 21 0 8 0.3553 26 70 0 8 0.35275 11 124 0 8 0.35275 15 109 0 8 0.3502 104 122 0 8 0.34765 35 131 0 8 0.34765 21 33 0 8 0.34765 13 110 0 8 0.34765 9 126 0 8 0.34765 8 129 0 8 0.34595 11 122 0 8 0.3434 7 82 0 8 0.3434 104 131 0 8 0.34085 88 123 0 8 0.34085 11 121 0 8 0.34085 5 134 0 8 0.3383 31 134 0 8 0.33575 31 95 0 8 0.33575 8 131 0 8 0.33575 108 128 0 8 0.3332 105 135 0 8 0.3332 92 127 0 8 0.3332 102 118 0 8 0.3281 15 69 0 8 0.3281 9 134 0 8 0.3281 8 106 0 8 0.3281 114 134 0 8 0.3264 37 135 0 8 0.3264 109 122 0 8 0.32385 107 135 0 8 0.32385 87 121 0 8 0.32385 22 104 0 8 0.32385 18 122 0 8 0.3213 18 121 0 8 0.3213 8 121 0 8 0.3213 95 133 0 8 0.31875 88 100 0 8 0.31875 17 108 0 8 0.31875 6 31 0 8 0.31875 5 75 0 8 0.31875 33 102 0 8 0.3162 22 32 0 8 0.3162 9 110 0 8 0.3162 107 127 0 8 0.3145 88 121 0 8 0.3145 19 35 0 8 0.3145 15 134 0 8 0.3145 3 29 0 8 0.3145 108 133 0 8 0.31195 33 101 0 8 0.31195 31 101 0 8 0.31195 115 127 0 8 0.3094 106 123 0 8 0.3094 25 100 0 8 0.3094 25 70 0 8 0.3094 17 29 0 8 0.3094 15 120 0 8 0.3094 15 104 0 8 0.3094 2 29 0 8 0.3094 2 25 0 8 0.3094 110 122 0 8 0.30685 106 135 0 8 0.30685 105 133 0 8 0.30685 24 101 0 8 0.30685 2 33 0 8 0.30685 18 82 0 8 0.3043 95 129 0 8 0.3026 36 90 0 8 0.3026 14 29 0 8 0.3026 10 112 0 8 0.3026 10 105 0 8 0.3026 15 70 0 8 0.30005 118 132 0 8 0.2975 37 122 0 8 0.2975 29 135 0 8 0.2975 21 123 0 8 0.2975 107 117 0 8 0.29495 91 131 0 8 0.29495 87 108 0 8 0.29495 87 107 0 8 0.29495 33 70 0 8 0.29325 21 131 0 8 0.29325 8 23 0 8 0.29325 87 129 0 8 0.2907 31 75 0 8 0.2907 25 125 0 8 0.2907 19 82 0 8 0.2907 14 110 0 8 0.2907 1 29 0 8 0.2907 21 100 0 8 0.28815 9 112 0 8 0.28815 8 108 0 8 0.28815 6 101 0 8 0.28815 21 35 0 8 0.28645 21 34 0 8 0.28645 8 75 0 8 0.28645 4 108 0 8 0.28645 116 126 0 8 0.2839 21 70 0 8 0.28135 108 135 0 8 0.27965 102 126 0 8 0.27965 15 121 0 8 0.27965 8 82 0 8 0.27965 37 107 0 8 0.2771 18 136 0 8 0.2771 92 108 0 8 0.27455 35 81 0 8 0.27455 24 73 0 8 0.27455 18 120 0 8 0.27455 108 131 0 8 0.27285 38 87 0 8 0.27285 88 108 0 8 0.2703 37 105 0 8 0.2703 9 135 0 8 0.2703 118 134 0 8 0.2686 102 116 0 8 0.2686 95 121 0 8 0.2686 22 106 0 8 0.2686 21 105 0 8 0.2686 10 132 0 8 0.2686 9 21 0 8 0.2686 8 83 0 8 0.2686 6 134 0 8 0.2686 6 70 0 8 0.2686 110 119 0 8 0.26605 70 103 0 8 0.26605 66 126 0 8 0.26605 13 109 0 8 0.2635 108 132 0 8 0.2618 29 100 0 8 0.2618 38 121 0 8 0.25925 26 38 0 8 0.25925 9 88 0 8 0.25925 34 126 0 8 0.25755 31 66 0 8 0.25755 29 75 0 8 0.25755 11 111 0 8 0.25755 2 98 0 8 0.25755 109 127 0 8 0.255 107 131 0 8 0.255 92 128 0 8 0.255 35 116 0 8 0.255 29 101 0 8 0.255 25 95 0 8 0.255 24 108 0 8 0.255 8 114 0 8 0.255 116 132 0 8 0.2533 108 126 0 8 0.2533 37 121 0 8 0.2533 91 104 0 8 0.25075 88 115 0 8 0.25075 114 135 0 8 0.24905 100 125 0 8 0.24905 26 134 0 8 0.24905 35 122 0 8 0.2465 21 125 0 8 0.2465 62 105 0 8 0.2448 37 95 0 8 0.2448 34 91 0 8 0.2448 92 107 0 8 0.24225 23 32 0 8 0.24225 12 85 0 8 0.24225 6 39 0 8 0.24225 88 122 0 8 0.24055 82 107 0 8 0.24055 33 136 0 8 0.24055 11 109 0 8 0.24055 10 122 0 8 0.24055 99 119 0 8 0.238 21 98 0 8 0.238 6 126 0 8 0.2363 66 95 0 8 0.2346 55 107 0 8 0.2346 21 121 0 8 0.2346 16 120 0 8 0.2346 36 75 0 8 0.23205 17 120 0 8 0.23205 8 29 0 8 0.23205 3 34 0 8 0.23205 126 135 0 8 0.23035 22 136 0 8 0.23035 13 120 0 8 0.23035 6 75 0 8 0.23035 5 125 0 8 0.23035 100 129 0 8 0.2278 84 108 0 8 0.2278 32 101 0 8 0.2278 31 125 0 8 0.2278 8 70 0 8 0.2278 107 136 0 8 0.2261 69 132 0 8 0.2261 24 136 0 8 0.2261 4 29 0 8 0.2261 25 103 0 8 0.2244 19 131 0 8 0.2244 18 102 0 8 0.2244 18 66 0 8 0.2244 112 134 0 8 0.22185 115 124 0 8 0.22015 39 134 0 8 0.22015 24 115 0 8 0.22015 17 123 0 8 0.22015 70 131 0 8 0.21845 37 125 0 8 0.21845 25 108 0 8 0.21845 21 120 0 8 0.21675 7 34 0 8 0.2142 4 107 0 8 0.2142 31 70 0 8 0.2125 25 73 0 8 0.2108 15 110 0 8 0.2108 9 62 0 8 0.2108 8 17 0 8 0.2108 75 87 0 8 0.2091 18 118 0 8 0.2091 120 136 0 8 0.20655 75 118 0 8 0.20655 34 107 0 8 0.20655 29 97 0 8 0.20655 23 73 0 8 0.20655 22 107 0 8 0.20655 21 104 0 8 0.20655 15 37 0 8 0.20655 10 23 0 8 0.20655 37 94 0 8 0.20485 29 102 0 8 0.20485 8 109 0 8 0.20485 5 32 0 8 0.20485 58 122 0 8 0.20315 25 114 0 8 0.20315 13 107 0 8 0.20315 21 126 0 8 0.20145 107 123 0 8 0.19975 35 94 0 8 0.19975 23 109 0 8 0.19975 21 69 0 8 0.19975 8 101 0 8 0.19975 26 113 0 8 0.1972 21 102 0 8 0.1972 15 119 0 8 0.1972 12 21 0 8 0.1972 11 21 0 8 0.1972 66 102 0 8 0.1955 19 98 0 8 0.1955 8 116 0 8 0.1955 105 123 0 8 0.1938 95 120 0 8 0.1938 66 122 0 8 0.1938 8 66 0 8 0.1938 6 58 0 8 0.1938 107 134 0 8 0.1921 24 122 0 8 0.1921 18 29 0 8 0.1921 101 132 0 8 0.1904 100 122 0 8 0.1904 12 123 0 8 0.1904 11 25 0 8 0.1904 9 124 0 8 0.1904 84 110 0 8 0.1887 35 134 0 8 0.1887 32 76 0 8 0.1887 29 76 0 8 0.1887 18 133 0 8 0.1887 95 105 0 8 0.187 18 34 0 8 0.187 37 136 0 8 0.1853 9 82 0 8 0.1853 125 135 0 8 0.1836 102 113 0 8 0.1836 35 108 0 8 0.1836 19 29 0 8 0.1836 8 112 0 8 0.1836 116 125 0 8 0.1819 82 113 0 8 0.1819 34 134 0 8 0.1819 2 116 0 8 0.1819 2 108 0 8 0.1819 119 134 0 8 0.1802 62 122 0 8 0.1802 36 83 0 8 0.1802 35 121 0 8 0.1802 25 126 0 8 0.1802 10 62 0 8 0.1802 END