Wed Aug 11 10:40:13 PDT 2004
T0275

DUE 31 Aug 2004


Wed Aug 11 12:40:43 PDT 2004 Kevin Karplus

Comparative model with 1tq8A and other c.26.2.4 templates.

I picked up a few bogus templates as well from the t04-100-40... hits,
so as to get down to 1o97C, which is a c.26.2.3 hit.

This looks like a fairly easy target, though there is a little loop
modeling in the middle that might slow things down.


Wed Aug 11 16:25:17 PDT 2004 Kevin Karplus

The rr constraints are very good on this target, but completely unneeded.

try1-opt2 looks pretty good.
I think I'll just do an unconstrained optimization run and call it done.


Fri Aug 13 12:29:52 PDT 2004 Kevin Karplus

try2-opt2 looks just a tiny bit foamy, but I doubt we'll be able to
get better packing out of undertaker. 

Rosetta likes try1-opt2.repack-nonPC slightly better than try2

I'll submit 
	try2-opt2
	try1-opt2
	try1-opt2.repack-nonPC
	T0275-1tq8A-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5
	T0275-1mjhA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5

Thu Nov 18 23:54:59 PST 2004	Martina Koeva

Based on the smooth gdt scores:

best sam-t04	72.4511 (try1-opt1-scrwl)
best submit	70.6696 (model3)
model1		69.0724
auto		70.6645
align		46.7020
robetta best	69.0747	(robetta model1)
robetta1	69.0747