# List of top-scoring protein chains for T0274.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rz1A 161 6.52e-26 b.45.1.2 -4088 1i0rA 169 4.10e-20 1i0rA b.45.1.2 61489 1uscA 178 2.54e-18 b.45.1.2 -4074 1ejeA 192 7.34e-18 1ejeA b.45.1.2 25757 1zpdA 568 5.42e-01 1zpdA c.31.1.3 31741 c.36.1.5 31785 c.36.1.9 31786 1jilA 420 8.06e-01 c.26.1.1 66745 1ur6A 147 8.21e-01 d.20.1.1 -9400 1hywA 68 3.16e+00 1hywA d.186.1.1 61425 1h0dA 216 3.61e+00 b.1.1.1 83425 b.1.1.2 83426 1afvL 217 4.12e+00 32c2A b.1.1.1 20130 b.1.1.2 21160 1c9eA 306 4.17e+00 1ak1 c.92.1.1 35595 1dozA 309 4.18e+00 1ak1 c.92.1.1 35592 1c1hA 310 4.18e+00 1ak1 c.92.1.1 35593 1vzoA 355 4.58e+00 1mvwA 840 5.72e+00 i.15.1.1 79523 2mysA 843 5.74e+00 1lvk b.34.3.1 24557 c.37.1.9 32154 1pg4A 652 6.49e+00 e.23.1.1 88067 1qnzL 112 7.22e+00 32c2A b.1.1.1 20448 1irxA 523 7.80e+00 a.97.1.2 71378 c.26.1.1 71379 1iqwL 218 8.55e+00 b.1.1.1 66279 b.1.1.2 66280 1jm6A 407 8.94e+00 a.29.5.1 66876 d.122.1.4 66877 1f11A 218 8.99e+00 32c2A b.1.1.1 20456 b.1.1.2 21420 1o51A 114 9.16e+00 d.58.5.4 -10003 1rowA 109 9.30e+00 b.1.11.2 -2851 1c4eA 35 9.57e+00 1c4eA g.3.4.1 44080 1qcqA 148 1.04e+01 1u9aA d.20.1.1 38329 1ar71 302 1.12e+01 1pov1 1dgi1 288 1.16e+01 1iqqA 200 1.16e+01 d.124.1.1 66274 1q59A 172 1.17e+01 f.1.4.1 -12062 1hxs1 302 1.18e+01 1pov1 302 1.18e+01 1pov1 1ry2A 663 1.22e+01 e.23.1.1 -12011 1pda 313 1.25e+01 1pda c.94.1.1 35751 d.50.2.1 38794 1fhgA 154 1.28e+01 1tlk b.1.1.4 21706 1go3E 187 1.30e+01 b.40.4.5 83054 d.230.1.1 83055 1a53 247 1.30e+01 1a53 c.1.2.4 28564 1jul 248 1.31e+01 1a53 c.1.2.4 28566 1vscA 196 1.32e+01 1vcaA b.1.1.3 21651 b.1.1.4 21687 1ar61 302 1.33e+01 1pov1 1vcaA 202 1.33e+01 1vcaA b.1.1.3 21649 b.1.1.4 21685 1ij9A 196 1.34e+01 1vcaA b.1.1.3 62482 b.1.1.4 62483 1tlk 154 1.36e+01 1tlk b.1.1.4 21707 1gtkA 313 1.39e+01 c.94.1.1 76346 d.50.2.1 76347 1ypn 313 1.39e+01 1pda c.94.1.1 35754 d.50.2.1 38797 1al21 302 1.41e+01 1pov1 1mf2L 215 1.48e+01 32c2A b.1.1.1 20174 b.1.1.2 21198 2hrpL 218 1.48e+01 8fabA b.1.1.1 20170 b.1.1.2 21194 1h7mA 102 1.59e+01 d.79.3.1 83485 1qz8A 113 1.60e+01 unknown_sccs -4264 1k8kC 372 1.70e+01 b.69.4.1 68308 1dfaA 454 1.73e+01 1vdeA b.86.1.2 28375 d.95.2.2 40575 d.95.2.2 40576 1ef0A 462 1.74e+01 1vdeA b.86.1.2 28376 d.95.2.2 40577 d.95.2.2 40578 1q40B 219 1.75e+01 d.17.4.2 -9287 1jvaA 475 1.80e+01 b.86.1.2 77175 d.95.2.2 77176 d.95.2.2 77177 1c4zD 154 1.86e+01 1u9aA d.20.1.1 38331 1d1gA 168 1.90e+01 1d1gA c.71.1.1 34889 1kngA 156 1.94e+01 c.47.1.10 72777 1mwmA 320 2.07e+01 c.55.1.1 79580 c.55.1.1 79581 1gxcA 149 2.09e+01 b.26.1.2 70687 1devB 41 2.12e+01 1devB j.64.1.1 46354 1br2A 791 2.14e+01 1lvk b.34.3.1 24558 c.37.1.9 32155 1mk2B 38 2.15e+01 j.64.1.1 79218 1i58A 189 2.19e+01 1b3qA d.122.1.3 61773 1awiA 138 2.20e+01 1pne d.110.1.1 40871 1i5dA 191 2.20e+01 1b3qA d.122.1.3 61783 1fil 139 2.22e+01 1pne d.110.1.1 40869 1br1A 820 2.23e+01 1lvk b.34.3.1 24564 c.37.1.9 32161 1bu8A 452 2.25e+01 1gpl b.12.1.2 23647 c.69.1.19 34795 1uw7A 143 2.25e+01 unknown_sccs -4266 2mm1 153 2.36e+01 1a6m a.1.1.2 15203 1wba 175 2.39e+01 1wba b.42.4.1 25591 1hkuA 358 2.40e+01 c.2.1.4 83557 c.23.12.1 83558 1ivlA 107 2.41e+01 8fabA b.1.1.1 20516 1i2aA 219 2.42e+01 e.24.1.1 -12012 1i84S 1184 2.45e+01 1lvk i.15.1.1 61940 1jchA 551 2.48e+01 b.101.1.1 66491 b.110.1.1 66492 h.4.9.1 66493 1mx3A 347 2.49e+01 c.2.1.4 79638 c.23.12.1 79639 2ucz 165 2.57e+01 1u9aA d.20.1.1 38330 1go4E 100 2.60e+01 h.1.22.1 70296 1b8gA 429 2.62e+01 1b8gA c.67.1.4 34499 1kwmA 402 2.73e+01 c.56.5.1 73079 d.58.3.1 73080 1m7yA 435 2.78e+01 c.67.1.4 78761 1smrA 335 2.80e+01 1smrA b.50.1.2 26878 1bg2 325 2.85e+01 1bg2 c.37.1.9 32189 1de4C 640 3.12e+01 1cx8B a.48.2.1 17779 c.8.4.1 30760 c.56.5.5 33848 1lml 478 3.12e+01 1lml d.92.1.3 40295 1cx8A 639 3.14e+01 1cx8B a.48.2.1 17782 c.8.4.1 30763 c.56.5.5 33851 1cz4A 185 3.23e+01 1cz4A b.52.2.3 26934 d.31.1.1 38468 1j1oL 107 3.26e+01 b.1.1.1 77058 1jcnA 514 3.38e+01 c.1.5.1 84160 d.37.1.1 84161 d.37.1.1 84162 1mkjA 349 3.46e+01 c.37.1.9 79239 1ybvA 283 3.58e+01 1ybvA c.2.1.2 29948 1g0oA 283 3.58e+01 1ybvA c.2.1.2 60181 1fvpA 231 3.61e+01 1nfp c.1.16.2 29556 1g99A 408 3.65e+01 1g99A c.55.1.2 33457 c.55.1.2 33458 1mkyA 439 3.77e+01 c.37.1.8 79250 c.37.1.8 79251 d.52.5.1 79252 1uacL 107 3.79e+01 b.1.1.1 -2138 1f2eA 201 3.84e+01 1a0fA a.45.1.1 17745 c.47.1.5 33039 1dvoA 152 3.94e+01 1dvoA a.136.1.1 19623 2e2c 156 3.98e+01 1u9aA d.20.1.1 38336