# List of top-scoring protein chains for t2k-100-30-near-backbone-11 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rz1A 161 8.65e-24 b.45.1.2 -4088 1i0sA 169 3.69e-19 1i0rA b.45.1.2 61491 1i0rA 169 4.46e-19 1i0rA b.45.1.2 61489 1uscA 178 4.51e-18 b.45.1.2 -4074 1ejeA 192 1.14e-17 1ejeA b.45.1.2 25757 1zpdA 568 2.59e-01 1zpdA c.31.1.3 31741 c.36.1.5 31785 c.36.1.9 31786 1p6oA 161 1.29e+00 c.97.1.2 -8774 1b1cA 181 1.30e+00 1amoA c.23.5.2 31212 1fhgA 154 1.92e+00 1tlk b.1.1.4 21706 1uaqA 158 2.55e+00 c.97.1.2 88386 1jilA 420 3.34e+00 c.26.1.1 66745 1kwmA 402 3.49e+00 c.56.5.1 73079 d.58.3.1 73080 1q59A 172 3.91e+00 f.1.4.1 -12062 1ne2A 200 3.98e+00 c.66.1.32 85586 1bg2 325 4.05e+00 1bg2 c.37.1.9 32189 1tlk 154 4.14e+00 1tlk b.1.1.4 21707 1nx8A 273 4.33e+00 b.82.2.8 86374 1gu7A 364 4.83e+00 b.35.1.2 83321 c.2.1.1 83322 1fthA 122 5.25e+00 d.150.1.2 60028 1t0hB 224 5.46e+00 1iezA 217 8.42e+00 d.115.1.2 66129 1p7gA 222 9.06e+00 a.2.11.1 -108 d.44.1.1 -9742 1br2A 791 1.03e+01 1lvk b.34.3.1 24558 c.37.1.9 32155 1oaiA 59 1.07e+01 a.5.2.3 81255 1gakA 141 1.21e+01 1gakA a.19.1.1 16415 1bmtA 246 1.24e+01 1bmtA a.46.1.1 17757 c.23.6.1 31235 1euvB 86 1.26e+01 1a5r d.15.1.1 37598 1g57A 217 1.33e+01 1g57A d.115.1.2 60253 1dapA 320 1.38e+01 1dapA c.2.1.3 30053 d.81.1.3 39968 1f8aB 167 1.39e+01 1pinA b.72.1.1 27803 d.26.1.1 38432 3dapA 320 1.42e+01 1dapA c.2.1.3 30051 d.81.1.3 39966 1jq3A 296 1.48e+01 c.66.1.17 67079 1f06A 320 1.51e+01 1dapA c.2.1.3 59556 d.81.1.3 59557 1i2aA 219 1.51e+01 e.24.1.1 -12012 1go3E 187 1.71e+01 b.40.4.5 83054 d.230.1.1 83055 1cz4A 185 1.79e+01 1cz4A b.52.2.3 26934 d.31.1.1 38468 3pchA 200 2.01e+01 3pchA b.3.6.1 22653 1nqcA 217 2.09e+01 d.3.1.1 86024 1imoA 88 2.17e+01 1imoA c.15.1.2 62590 3pcnA 200 2.18e+01 3pchA b.3.6.1 22725 3pcgA 200 2.19e+01 3pchA b.3.6.1 22647 1i3cA 149 2.23e+01 c.23.1.1 71112 1bu8A 452 2.24e+01 1gpl b.12.1.2 23647 c.69.1.19 34795 1pxfA 111 2.24e+01 b.40.4.4 88341 1c4eA 35 2.28e+01 1c4eA g.3.4.1 44080 1h7mA 102 2.40e+01 d.79.3.1 83485 1mkyA 439 2.42e+01 c.37.1.8 79250 c.37.1.8 79251 d.52.5.1 79252 1dvoA 152 2.48e+01 1dvoA a.136.1.1 19623 1h6hA 143 2.85e+01 d.189.1.1 65681 1pinA 163 2.89e+01 1pinA b.72.1.1 27802 d.26.1.1 38431 1cjsA 219 2.90e+01 1cjsA e.24.1.1 43354 1frd 98 2.94e+01 1awd d.15.4.1 37648 1a53 247 3.06e+01 1a53 c.1.2.4 28564 2pcdA 200 3.15e+01 3pchA b.3.6.1 22665 1cdy 178 3.23e+01 1cdy b.1.1.1 19719 b.1.1.3 21658 1juk 248 3.29e+01 1a53 c.1.2.4 28567 1igs 248 3.29e+01 1a53 c.1.2.4 28565 1ovnA 248 3.42e+01 a.71.1.1 -1096 c.47.1.7 -7477 1nd4A 264 3.55e+01 d.144.1.6 -11381 1wkqA 164 3.62e+01 1ig8A 486 3.63e+01 2yhx c.55.1.3 64746 c.55.1.3 64747 1eqkA 102 3.70e+01 1eqkA d.17.1.2 37998 1uj6A 227 3.86e+01