# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rz1A 161 1.32e-28 b.45.1.2 -4088 1i0sA 169 3.75e-23 1i0rA b.45.1.2 61491 1i0rA 169 5.12e-23 1i0rA b.45.1.2 61489 1uscA 178 1.23e-21 b.45.1.2 -4074 1ejeA 192 8.11e-21 1ejeA b.45.1.2 25757 1jilA 420 3.23e-01 c.26.1.1 66745 1zpdA 568 3.80e-01 1zpdA c.31.1.3 31741 c.36.1.5 31785 c.36.1.9 31786 1ne2A 200 6.73e-01 c.66.1.32 85586 1b8gA 429 2.09e+00 1b8gA c.67.1.4 34499 1tfr 305 2.85e+00 1tfr a.60.7.1 18081 c.120.1.2 33351 1m7yA 435 2.93e+00 c.67.1.4 78761 1nqcA 217 4.16e+00 d.3.1.1 86024 1owtA 66 5.08e+00 d.230.3.1 87493 1p6oA 161 5.26e+00 c.97.1.2 -8774 1q59A 172 5.28e+00 f.1.4.1 -12062 1b1cA 181 6.89e+00 1amoA c.23.5.2 31212 1pxvA 183 7.21e+00 d.3.1.1 -8881 1khdA 345 7.68e+00 a.46.2.1 77400 c.27.1.1 77401 1iezA 217 9.49e+00 d.115.1.2 66129 1g0uI 205 1.11e+01 d.153.1.4 41891 1bmtA 246 1.15e+01 1bmtA a.46.1.1 17757 c.23.6.1 31235 1cjdA 394 1.27e+01 1cjdA b.121.2.1 58963 b.121.2.1 58964 1fhgA 154 1.28e+01 1tlk b.1.1.4 21706 1rypJ 204 1.33e+01 d.153.1.4 41878 1j1tA 233 1.34e+01 unknown_sccs -3462 1mc3A 296 1.39e+01 c.68.1.6 78943 1tlk 154 1.40e+01 1tlk b.1.1.4 21707 1m4jA 142 1.53e+01 d.109.1.2 78602 1euvB 86 1.61e+01 1a5r d.15.1.1 37598 1qazA 351 1.77e+01 1qazA a.102.3.1 18848 1e9rA 437 1.82e+01 c.37.1.11 64827 2ucz 165 1.92e+01 1u9aA d.20.1.1 38330 1n55A 251 1.93e+01 c.1.1.1 80007 1amk 251 2.04e+01 1amk c.1.1.1 28503 1hb5A 394 2.12e+01 i.6.1.1 65752 1hx6A 394 2.12e+01 1cjdA b.121.2.1 58995 b.121.2.1 58996 1hxiA 121 2.13e+01 1hxiA a.118.8.1 61366 1f8aB 167 2.25e+01 1pinA b.72.1.1 27803 d.26.1.1 38432 1bkzA 135 2.27e+01 1a3k b.29.1.3 24202 1ybvA 283 2.27e+01 1ybvA c.2.1.2 29948 1g0oA 283 2.27e+01 1ybvA c.2.1.2 60181 1amuA 563 2.31e+01 1amuA e.23.1.1 43351 1pinA 163 2.32e+01 1pinA b.72.1.1 27802 d.26.1.1 38431 1f2aA 215 2.49e+01 1cs8A d.3.1.1 37040 1fthA 122 2.53e+01 d.150.1.2 60028 1v8dA 235 2.61e+01 1gw5B 591 2.74e+01 a.118.1.10 70630 1ri5A 298 2.78e+01 unknown_sccs -8063 1iow 306 2.80e+01 1iow c.30.1.2 31713 d.142.1.1 41481 1b8pA 329 2.81e+01 1bmdA c.2.1.5 30147 d.162.1.1 42114 1me3A 215 2.96e+01 d.3.1.1 79022 1knvA 293 3.15e+01 c.52.1.7 68707 1gmyA 261 3.21e+01 d.3.1.1 76236 1bu8A 452 3.58e+01 1gpl b.12.1.2 23647 c.69.1.19 34795 1q8iA 783 3.61e+01 c.55.3.5 -7635 e.8.1.1 -11885 1p7gA 222 3.69e+01 a.2.11.1 -108 d.44.1.1 -9742 1aim 215 3.83e+01 1cs8A d.3.1.1 37044 1rn5A 177 3.96e+01 d.167.1.1 -11591