# List of top-scoring protein chains for T0274.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rz1A 161 1.22e-22 b.45.1.2 -4088 1ejeA 192 2.71e-20 1ejeA b.45.1.2 25757 1uscA 178 2.52e-17 b.45.1.2 -4074 1i0rA 169 4.90e-17 1i0rA b.45.1.2 61489 1jilA 420 1.45e-01 c.26.1.1 66745 1zpdA 568 2.24e-01 1zpdA c.31.1.3 31741 c.36.1.5 31785 c.36.1.9 31786 1ur6A 147 2.36e+00 d.20.1.1 -9400 1wba 175 3.77e+00 1wba b.42.4.1 25591 1c9eA 306 4.46e+00 1ak1 c.92.1.1 35595 1dozA 309 4.47e+00 1ak1 c.92.1.1 35592 1c1hA 310 4.48e+00 1ak1 c.92.1.1 35593 1irxA 523 5.21e+00 a.97.1.2 71378 c.26.1.1 71379 1fthA 122 5.35e+00 d.150.1.2 60028 1tlk 154 7.45e+00 1tlk b.1.1.4 21707 1vscA 196 7.78e+00 1vcaA b.1.1.3 21651 b.1.1.4 21687 1ij9A 196 7.83e+00 1vcaA b.1.1.3 62482 b.1.1.4 62483 1vcaA 202 7.93e+00 1vcaA b.1.1.3 21649 b.1.1.4 21685 1i2aA 219 8.16e+00 e.24.1.1 -12012 1c4eA 35 8.37e+00 1c4eA g.3.4.1 44080 1cz4A 185 9.38e+00 1cz4A b.52.2.3 26934 d.31.1.1 38468 1bg2 325 9.56e+00 1bg2 c.37.1.9 32189 1qcqA 148 9.80e+00 1u9aA d.20.1.1 38329 1d1gA 168 1.00e+01 1d1gA c.71.1.1 34889 1hkuA 358 1.07e+01 c.2.1.4 83557 c.23.12.1 83558 1oyzA 280 1.10e+01 unknown_sccs -1573 1fhgA 154 1.11e+01 1tlk b.1.1.4 21706 1vzoA 355 1.16e+01 1ry2A 663 1.18e+01 e.23.1.1 -12011 1mkjA 349 1.18e+01 c.37.1.9 79239 1qoiA 177 1.20e+01 2cpl b.62.1.1 27490 1mx3A 347 1.20e+01 c.2.1.4 79638 c.23.12.1 79639 2ucz 165 1.22e+01 1u9aA d.20.1.1 38330 1ybvA 283 1.23e+01 1ybvA c.2.1.2 29948 1g0oA 283 1.23e+01 1ybvA c.2.1.2 60181 1ar71 302 1.26e+01 1pov1 1dgi1 288 1.30e+01 1k6mA 432 1.30e+01 c.37.1.7 77275 c.60.1.4 77276 1io7A 368 1.30e+01 1f4tA a.104.1.1 18971 1io8A 368 1.31e+01 1f4tA a.104.1.1 62618 1hxs1 302 1.32e+01 1pov1 302 1.32e+01 1pov1 1pda 313 1.45e+01 1pda c.94.1.1 35751 d.50.2.1 38794 1ypn 313 1.45e+01 1pda c.94.1.1 35754 d.50.2.1 38797 1gtkA 313 1.48e+01 c.94.1.1 76346 d.50.2.1 76347 1b1cA 181 1.50e+01 1amoA c.23.5.2 31212 1h0dA 216 1.53e+01 b.1.1.1 83425 b.1.1.2 83426 1iltA 152 1.72e+01 1irp b.42.1.2 25554 1irp 153 1.73e+01 1irp b.42.1.2 25559 1mjhA 162 1.75e+01 1mjhA c.26.2.4 31639 1ar61 302 1.79e+01 1pov1 1go4E 100 1.86e+01 h.1.22.1 70296 1al21 302 1.87e+01 1pov1 1nypA 66 1.95e+01 g.39.1.3 86411 g.39.1.3 86412 1hywA 68 2.16e+01 1hywA d.186.1.1 61425 1gyrA 364 2.23e+01 b.35.1.2 83386 c.2.1.1 83387 1afvL 217 2.26e+01 32c2A b.1.1.1 20130 b.1.1.2 21160 1br2A 791 2.26e+01 1lvk b.34.3.1 24558 c.37.1.9 32155 1gu7A 364 2.29e+01 b.35.1.2 83321 c.2.1.1 83322 1pg4A 652 2.31e+01 e.23.1.1 88067 1mwmA 320 2.31e+01 c.55.1.1 79580 c.55.1.1 79581 1br1A 820 2.33e+01 1lvk b.34.3.1 24564 c.37.1.9 32161 1h0kA 364 2.36e+01 b.35.1.2 83435 c.2.1.1 83436 1dfuP 94 2.40e+01 1dfuP b.53.1.1 26936 1izcA 339 2.42e+01 c.1.12.5 83838 1n9gB 386 2.43e+01 b.35.1.2 -3721 c.2.1.1 -5745 487dN 95 2.49e+01 1dfuP i.1.1.2 45841 1i84S 1184 2.49e+01 1lvk i.15.1.1 61940 1n9gA 386 2.50e+01 b.35.1.2 -3720 c.2.1.1 -5744 1iqqA 200 2.51e+01 d.124.1.1 66274 1bfd 528 2.62e+01 1bfd c.31.1.3 31745 c.36.1.5 31801 c.36.1.9 31802 1go3E 187 2.69e+01 b.40.4.5 83054 d.230.1.1 83055 1qnzL 112 2.78e+01 32c2A b.1.1.1 20448 1i6vA 314 2.89e+01 d.74.3.1 61852 d.181.1.1 61853 1as0 353 3.03e+01 1cipA a.66.1.1 18212 c.37.1.8 32095 1cipA 353 3.16e+01 1cipA a.66.1.1 18210 c.37.1.8 32093 1gu6A 452 3.20e+01 a.138.1.3 70575 1kjyA 325 3.22e+01 a.66.1.1 72624 c.37.1.8 72625 1jul 248 3.26e+01 1a53 c.1.2.4 28566 1a53 247 3.26e+01 1a53 c.1.2.4 28564 1svsA 353 3.28e+01 1f11A 218 3.39e+01 32c2A b.1.1.1 20456 b.1.1.2 21420 1gntA 553 3.42e+01 e.26.1.1 70290 1gg2A 353 3.45e+01 1cipA a.66.1.1 18226 c.37.1.8 32109 1gil 353 3.58e+01 1cipA a.66.1.1 18223 c.37.1.8 32106 1ny72 369 3.60e+01 1m6nA 802 3.73e+01 a.162.1.1 78697 a.172.1.1 78698 c.37.1.19 78699 c.37.1.19 78700 1eodA 100 3.76e+01 1t1dA d.42.1.2 38641 1n1bA 549 3.89e+01 a.102.4.1 79799 a.128.1.3 79800 1smrA 335 3.90e+01 1smrA b.50.1.2 26878 1ae9A 179 3.91e+01 1ae9A d.163.1.1 42153