# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rz1A 161 2.32e-29 b.45.1.2 -4088 1ejeA 192 9.91e-27 1ejeA b.45.1.2 25757 1uscA 178 1.26e-23 b.45.1.2 -4074 1i0rA 169 3.94e-22 1i0rA b.45.1.2 61489 1i0sA 169 3.94e-22 1i0rA b.45.1.2 61491 1pda 315 1.43e-01 1pda c.94.1.1 35751 d.50.2.1 38794 1d1gA 168 2.25e-01 1d1gA c.71.1.1 34889 1gtkA 313 3.38e-01 c.94.1.1 76346 d.50.2.1 76347 1flmA 122 5.81e-01 1axj b.45.1.1 25747 1rxxA 421 1.27e+00 unknown_sccs -10982 1ks9A 291 1.65e+00 a.100.1.7 68857 c.2.1.6 68858 1n3gA 113 1.71e+00 d.204.1.1 79962 1v5xA 203 1.87e+00 c.1.2.4 -5169 1zpdA 568 2.11e+00 1zpdA c.31.1.3 31741 c.36.1.5 31785 c.36.1.9 31786 1fhgA 154 2.15e+00 1tlk b.1.1.4 21706 1tlk 154 2.20e+00 1tlk b.1.1.4 21707 1p6oA 161 3.23e+00 c.97.1.2 -8774 1fthA 122 3.86e+00 d.150.1.2 60028 1ne2A 200 3.91e+00 c.66.1.32 85586 1vavA 222 4.21e+00 1ltoA 245 4.39e+00 b.47.1.2 84707 1izcA 339 5.44e+00 c.1.12.5 83838 1i58A 189 5.47e+00 1b3qA d.122.1.3 61773 1ass 159 5.48e+00 1a6dA c.8.5.2 30818 1p7gA 222 6.14e+00 a.2.11.1 -108 d.44.1.1 -9742 1dnlA 199 6.45e+00 1ci0A b.45.1.1 25753 1p0kA 349 6.52e+00 c.1.4.1 87648 1r6xA 395 6.58e+00 b.122.1.3 -5125 c.26.1.5 -6620 1kkcA 221 7.11e+00 a.2.11.1 68660 d.44.1.1 68661 1vcaA 202 7.14e+00 1vcaA b.1.1.3 21649 b.1.1.4 21685 1i2aA 219 7.79e+00 e.24.1.1 -12012 1jdw 423 8.47e+00 1jdw d.126.1.2 41129 1k6dA 220 9.16e+00 unknown_sccs 72082 1g8fA 511 9.26e+00 1g8fA b.122.1.3 60348 c.26.1.5 60349 c.37.1.15 60350 1q8iA 783 9.56e+00 c.55.3.5 -7635 e.8.1.1 -11885 2bltA 361 1.02e+01 1gceA e.3.1.1 42739 1fc6A 388 1.25e+01 1fc6A b.36.1.3 64738 c.14.1.2 64739 1my6A 199 1.28e+01 a.2.11.1 85232 d.44.1.1 85233 1i3cA 149 1.34e+01 c.23.1.1 71112 1k9sA 237 1.40e+01 c.56.2.1 68359 1ecpA 238 1.41e+01 1ecpA c.56.2.1 33775 1b1cA 181 1.44e+01 1amoA c.23.5.2 31212 1o5kA 306 1.53e+01 c.1.10.1 -5482 1dcfA 136 1.54e+01 1dcfA c.23.1.2 31124 1smvA 260 1.54e+01 1smvA b.121.4.7 23288 1r9hA 135 1.54e+01 d.26.1.1 -9482 1gr3A 160 1.55e+01 b.22.1.1 65476 1inp 400 1.59e+01 1inp e.7.1.1 42972 1nytA 271 1.59e+01 c.2.1.7 86417 c.58.1.5 86418 1krhA 338 1.62e+01 b.43.4.2 72891 c.25.1.2 72892 d.15.4.2 72893 1dtdA 303 1.67e+01 1aye c.56.5.1 33823 1gmlA 178 1.69e+01 c.8.5.2 70273 1b7gO 340 1.75e+01 1b7gO c.2.1.3 29992 d.81.1.1 39907 1nktA 922 1.93e+01 a.162.1.1 85830 a.172.1.1 85831 c.37.1.19 85832 c.37.1.19 85833 2plc 274 2.03e+01 2plc c.1.18.2 29614 1h6hA 143 2.05e+01 d.189.1.1 65681 1ggxA 223 2.06e+01 1ggxA d.22.1.1 38367 1iscA 192 2.11e+01 1avmA a.2.11.1 15733 d.44.1.1 38726 1uhvA 500 2.28e+01 b.71.1.2 -4683 c.1.8.3 -5354 1havA 217 2.34e+01 1havA b.47.1.4 26423 1ga0A 364 2.37e+01 1gceA e.3.1.1 60410 1miuA 738 2.38e+01 a.170.1.1 79153 a.171.1.1 79154 b.40.4.3 79155 b.40.4.3 79156 b.40.4.3 79157 1f7lA 121 2.44e+01 1f7lA d.150.1.2 59666 1lswA 131 2.48e+01 d.110.3.2 78181 1m2xA 223 2.60e+01 d.157.1.1 84764 1lyvA 306 2.72e+01 c.45.1.2 74348 1aozA 552 2.77e+01 1aozA b.6.1.3 23124 b.6.1.3 23125 b.6.1.3 23126 1s7jA 262 2.77e+01 d.21.1.2 -9424 1kwgA 645 2.85e+01 b.71.1.1 77561 c.1.8.1 77562 c.23.16.5 77563 1jwiA 131 2.95e+01 d.169.1.1 67383 1f06A 320 3.15e+01 1dapA c.2.1.3 59556 d.81.1.3 59557 1i8kA 107 3.19e+01 b.1.1.1 71130 1o98A 511 3.33e+01 c.105.1.1 86684 c.76.1.3 86685 1i0hA 205 3.43e+01 1avmA a.2.11.1 15760 d.44.1.1 38685 1ix9A 205 3.43e+01 a.2.11.1 76899 d.44.1.1 76900 1rgyA 360 3.50e+01 e.3.1.1 -11768 1g4wR 383 3.54e+01 1g4uS a.24.11.1 16644 c.45.1.2 32692 1qreA 247 3.61e+01 1qreA b.81.1.5 28066 1stfI 98 3.62e+01 1stfI d.17.1.2 38006 1nrgA 261 3.75e+01 b.45.1.1 80694 1nox 205 3.88e+01 1nox d.90.1.1 40242 1spvA 184 4.00e+01 c.50.1.2 -7937