# List of top-scoring protein chains for t04-100-30-near-backbone-11 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rz1A 161 2.69e-23 b.45.1.2 -4088 1ejeA 192 3.19e-21 1ejeA b.45.1.2 25757 1uscA 178 4.99e-19 b.45.1.2 -4074 1i0sA 169 7.53e-19 1i0rA b.45.1.2 61491 1i0rA 169 9.87e-19 1i0rA b.45.1.2 61489 1zpdA 568 5.40e-02 1zpdA c.31.1.3 31741 c.36.1.5 31785 c.36.1.9 31786 1b1cA 181 9.52e-01 1amoA c.23.5.2 31212 1fthA 122 1.18e+00 d.150.1.2 60028 1jilA 420 1.26e+00 c.26.1.1 66745 1bg2 325 2.12e+00 1bg2 c.37.1.9 32189 1fhgA 154 2.36e+00 1tlk b.1.1.4 21706 1tlk 154 2.97e+00 1tlk b.1.1.4 21707 1gu7A 364 3.35e+00 b.35.1.2 83321 c.2.1.1 83322 1p6oA 161 3.47e+00 c.97.1.2 -8774 1n4qB 377 4.07e+00 a.102.4.3 -1424 1cz4A 185 4.49e+00 1cz4A b.52.2.3 26934 d.31.1.1 38468 1t0hB 224 7.23e+00 1ne2A 200 7.31e+00 c.66.1.32 85586 1rxxA 421 8.17e+00 unknown_sccs -10982 1kwmA 402 8.34e+00 c.56.5.1 73079 d.58.3.1 73080 1i2aA 219 8.42e+00 e.24.1.1 -12012 1euvB 86 9.42e+00 1a5r d.15.1.1 37598 1frd 98 9.89e+00 1awd d.15.4.1 37648 1jb3A 131 1.07e+01 1jc7A b.40.3.2 62833 1g57A 217 1.11e+01 1g57A d.115.1.2 60253 1khdA 345 1.14e+01 a.46.2.1 77400 c.27.1.1 77401 1ri5A 298 1.22e+01 unknown_sccs -8063 1pxfA 111 1.24e+01 b.40.4.4 88341 1c4eA 35 1.38e+01 1c4eA g.3.4.1 44080 1jdw 423 1.53e+01 1jdw d.126.1.2 41129 1gakA 141 1.68e+01 1gakA a.19.1.1 16415 1pxgA 382 1.82e+01 c.1.20.1 -5616 1bmtA 246 1.85e+01 1bmtA a.46.1.1 17757 c.23.6.1 31235 1izcA 339 1.97e+01 c.1.12.5 83838 1q0eA 152 1.97e+01 b.1.8.1 -2798 1pud 386 1.98e+01 1pud c.1.20.1 29658 1hu4A 288 2.07e+01 1hu4A 1n5dA 288 2.10e+01 c.2.1.2 80030 1h6hA 143 2.26e+01 d.189.1.1 65681 1p7gA 222 2.32e+01 a.2.11.1 -108 d.44.1.1 -9742 1svsA 353 2.41e+01 1qpcA 279 2.52e+01 1fgkA d.144.1.7 41685 1p5dX 463 2.55e+01 c.84.1.1 -8554 c.84.1.1 -8555 c.84.1.1 -8556 d.129.2.1 -11029 1qoiA 177 2.57e+01 2cpl b.62.1.1 27490 1qlpA 394 2.64e+01 1ovaA e.1.1.1 42628 1go3E 187 2.74e+01 b.40.4.5 83054 d.230.1.1 83055 1csn 298 2.81e+01 1csn d.144.1.7 41664 1cipA 353 2.82e+01 1cipA a.66.1.1 18210 c.37.1.8 32093 1ja1A 622 2.86e+01 1amoA b.43.4.1 62803 c.23.5.2 62804 c.25.1.4 62805 1j54A 186 2.94e+01 c.55.3.5 77077 1uxy 340 3.02e+01 2mbr d.145.1.2 41748 d.146.1.1 41761 1nowA 507 3.05e+01 c.1.8.6 85936 d.92.2.1 85937 1si2A 149 3.12e+01 1quqB 121 3.14e+01 1quqB b.40.4.3 25305 1h7mA 102 3.14e+01 d.79.3.1 83485 1r5yA 386 3.34e+01 c.1.20.1 -5626 1cbjA 151 3.34e+01 1mfmA b.1.8.1 22213 1io0A 185 3.37e+01 c.10.1.1 76753 1v92A 46 3.40e+01 a.5.2.3 -357 1eybA 471 3.88e+01 1ey2A b.82.1.4 28115 1vcaA 202 3.99e+01 1vcaA b.1.1.3 21649 b.1.1.4 21685 1lm4A 194 3.99e+01 d.167.1.1 84626