# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rz1A 161 1.57e-28 b.45.1.2 -4088 1ejeA 192 2.48e-26 1ejeA b.45.1.2 25757 1uscA 178 9.32e-23 b.45.1.2 -4074 1i0rA 169 3.15e-22 1i0rA b.45.1.2 61489 1i0sA 169 3.15e-22 1i0rA b.45.1.2 61491 1d1gA 168 1.27e-02 1d1gA c.71.1.1 34889 1pda 315 2.24e-02 1pda c.94.1.1 35751 d.50.2.1 38794 1gtkA 313 6.55e-02 c.94.1.1 76346 d.50.2.1 76347 1flmA 122 5.02e-01 1axj b.45.1.1 25747 1fhgA 154 6.09e-01 1tlk b.1.1.4 21706 1tlk 154 7.11e-01 1tlk b.1.1.4 21707 1zpdA 568 7.88e-01 1zpdA c.31.1.3 31741 c.36.1.5 31785 c.36.1.9 31786 1ne2A 200 1.01e+00 c.66.1.32 85586 1p6oA 161 2.58e+00 c.97.1.2 -8774 1rxxA 421 2.86e+00 unknown_sccs -10982 1t62A 166 3.49e+00 1fjgL 135 4.54e+00 1fjfL b.40.4.5 25346 1i58A 189 4.91e+00 1b3qA d.122.1.3 61773 1dnlA 199 5.04e+00 1ci0A b.45.1.1 25753 1n3gA 113 5.46e+00 d.204.1.1 79962 1fthA 122 6.18e+00 d.150.1.2 60028 1k6dA 220 6.60e+00 unknown_sccs 72082 1g8fA 511 8.69e+00 1g8fA b.122.1.3 60348 c.26.1.5 60349 c.37.1.15 60350 1aozA 552 8.95e+00 1aozA b.6.1.3 23124 b.6.1.3 23125 b.6.1.3 23126 1i2aA 219 9.01e+00 e.24.1.1 -12012 1vcaA 202 9.38e+00 1vcaA b.1.1.3 21649 b.1.1.4 21685 1gr3A 160 9.67e+00 b.22.1.1 65476 1kwmA 402 9.70e+00 c.56.5.1 73079 d.58.3.1 73080 1v5xA 203 1.00e+01 c.1.2.4 -5169 1gmxA 108 1.05e+01 c.46.1.3 65355 1lyvA 306 1.12e+01 c.45.1.2 74348 1ytw 306 1.12e+01 1ytw c.45.1.2 32689 1hywA 68 1.14e+01 1hywA d.186.1.1 61425 1r6xA 395 1.20e+01 b.122.1.3 -5125 c.26.1.5 -6620 1s9rA 410 1.28e+01 unknown_sccs -10989 1gt6A 269 1.34e+01 c.69.1.17 76342 1ix9A 205 1.41e+01 a.2.11.1 76899 d.44.1.1 76900 1i0hA 205 1.42e+01 1avmA a.2.11.1 15760 d.44.1.1 38685 1dcfA 136 1.50e+01 1dcfA c.23.1.2 31124 1jb3A 131 1.57e+01 1jc7A b.40.3.2 62833 1havA 217 1.57e+01 1havA b.47.1.4 26423 1k9sA 237 1.62e+01 c.56.2.1 68359 1smvA 260 1.66e+01 1smvA b.121.4.7 23288 1cz4A 185 1.78e+01 1cz4A b.52.2.3 26934 d.31.1.1 38468 1pc3A 350 1.85e+01 1h6hA 143 1.85e+01 d.189.1.1 65681 1fc6A 388 1.91e+01 1fc6A b.36.1.3 64738 c.14.1.2 64739 1lswA 131 2.02e+01 d.110.3.2 78181 1izcA 339 2.02e+01 c.1.12.5 83838 1othA 321 2.04e+01 1othA c.78.1.1 35260 c.78.1.1 35261 1o5kA 306 2.14e+01 c.1.10.1 -5482 1i3cA 149 2.14e+01 c.23.1.1 71112 1miuA 738 2.16e+01 a.170.1.1 79153 a.171.1.1 79154 b.40.4.3 79155 b.40.4.3 79156 b.40.4.3 79157 1mqsA 671 2.27e+01 e.25.1.1 79414 1mexL 213 2.37e+01 b.1.1.1 -2124 b.1.1.2 -2352 1o91A 178 2.55e+01 b.22.1.1 -3282 1iuhA 198 2.56e+01 d.61.1.2 83711 1a04A 215 2.68e+01 1a04A a.4.6.2 16234 c.23.1.1 31089 1et9A 204 2.71e+01 1an8 b.40.2.2 25204 d.15.6.1 37793 1q8iA 783 2.74e+01 c.55.3.5 -7635 e.8.1.1 -11885 1f5fA 205 2.75e+01 1d2sA b.29.1.4 24222 1ngzA 213 2.82e+01 b.1.1.1 80500 b.1.1.2 80501 1ecpA 238 2.87e+01 1ecpA c.56.2.1 33775 1vavA 222 2.87e+01 1nox 205 2.94e+01 1nox d.90.1.1 40242 1iakA 199 2.94e+01 1iakA b.1.1.2 21625 d.19.1.1 38199 2bltA 361 2.97e+01 1gceA e.3.1.1 42739 1krhA 338 3.01e+01 b.43.4.2 72891 c.25.1.2 72892 d.15.4.2 72893 1r9hA 135 3.09e+01 d.26.1.1 -9482 1qa7A 217 3.17e+01 1havA b.47.1.4 26425 1qhfA 240 3.20e+01 1qhfA c.60.1.1 33960 1n57A 291 3.48e+01 c.23.16.2 85328 1i8kA 107 3.50e+01 b.1.1.1 71130 1c4eA 35 3.56e+01 1c4eA g.3.4.1 44080 1p0kA 349 3.61e+01 c.1.4.1 87648 1ga0A 364 3.67e+01 1gceA e.3.1.1 60410 1vhwA 253 3.70e+01 c.56.2.1 -7765 1kkcA 221 3.72e+01 a.2.11.1 68660 d.44.1.1 68661 1epwA 1290 3.75e+01 b.29.1.6 24269 b.42.4.2 25614 d.92.1.7 40305 h.4.2.1 45785 1rgzA 363 3.75e+01 e.3.1.1 -11771 1h8eD 482 3.87e+01 1skyE a.69.1.1 60747 b.49.1.1 60748 c.37.1.11 60749 1kb9A 431 3.89e+01 d.185.1.1 77311 d.185.1.1 77312 1byqA 228 3.98e+01 1yer d.122.1.1 41100