# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rz1A 161 4.63e-33 b.45.1.2 -4088 1ejeA 192 3.25e-30 1ejeA b.45.1.2 25757 1uscA 178 2.55e-27 b.45.1.2 -4074 1i0rA 169 3.33e-25 1i0rA b.45.1.2 61489 1i0sA 169 3.33e-25 1i0rA b.45.1.2 61491 1d1gA 168 2.61e-02 1d1gA c.71.1.1 34889 1pda 315 4.83e-02 1pda c.94.1.1 35751 d.50.2.1 38794 1gtkA 313 6.20e-02 c.94.1.1 76346 d.50.2.1 76347 1v5xA 203 2.29e-01 c.1.2.4 -5169 1fhgA 154 2.61e-01 1tlk b.1.1.4 21706 1tlk 154 2.78e-01 1tlk b.1.1.4 21707 1flmA 122 2.97e-01 1axj b.45.1.1 25747 1rxxA 421 3.30e-01 unknown_sccs -10982 1vavA 222 7.00e-01 1ne2A 200 8.30e-01 c.66.1.32 85586 1p6oA 161 8.37e-01 c.97.1.2 -8774 1kkcA 221 8.86e-01 a.2.11.1 68660 d.44.1.1 68661 1n3gA 113 1.28e+00 d.204.1.1 79962 1vcaA 202 2.17e+00 1vcaA b.1.1.3 21649 b.1.1.4 21685 1ass 159 2.19e+00 1a6dA c.8.5.2 30818 1dnlA 199 2.45e+00 1ci0A b.45.1.1 25753 1mqsA 671 2.49e+00 e.25.1.1 79414 1i3cA 149 2.70e+00 c.23.1.1 71112 1fc6A 388 2.89e+00 1fc6A b.36.1.3 64738 c.14.1.2 64739 1k9sA 237 2.93e+00 c.56.2.1 68359 1f7lA 121 2.94e+00 1f7lA d.150.1.2 59666 1iscA 192 3.04e+00 1avmA a.2.11.1 15733 d.44.1.1 38726 1zpdA 568 3.11e+00 1zpdA c.31.1.3 31741 c.36.1.5 31785 c.36.1.9 31786 1i58A 189 3.21e+00 1b3qA d.122.1.3 61773 1krhA 338 3.22e+00 b.43.4.2 72891 c.25.1.2 72892 d.15.4.2 72893 1o5kA 306 3.62e+00 c.1.10.1 -5482 1qhfA 240 3.66e+00 1qhfA c.60.1.1 33960 1my6A 199 4.75e+00 a.2.11.1 85232 d.44.1.1 85233 1s9rA 410 4.75e+00 unknown_sccs -10989 1fjgL 135 5.08e+00 1fjfL b.40.4.5 25346 1ecpA 238 5.17e+00 1ecpA c.56.2.1 33775 3hhrB 203 5.30e+00 1axiB b.1.2.1 22005 b.1.2.1 22006 1i2aA 219 5.44e+00 e.24.1.1 -12012 1nox 205 5.87e+00 1nox d.90.1.1 40242 1gt6A 269 6.28e+00 c.69.1.17 76342 1nytA 271 6.67e+00 c.2.1.7 86417 c.58.1.5 86418 1gr3A 160 6.77e+00 b.22.1.1 65476 1r6xA 395 7.24e+00 b.122.1.3 -5125 c.26.1.5 -6620 1axiB 236 7.39e+00 1axiB b.1.2.1 21997 b.1.2.1 21998 1h6hA 143 7.63e+00 d.189.1.1 65681 1mngA 203 7.67e+00 1avmA a.2.11.1 15776 d.44.1.1 38701 1cojA 212 7.88e+00 1avmA a.2.11.1 15737 d.44.1.1 38734 1fthA 122 8.29e+00 d.150.1.2 60028 1g8fA 511 8.73e+00 1g8fA b.122.1.3 60348 c.26.1.5 60349 c.37.1.15 60350 1dcfA 136 8.74e+00 1dcfA c.23.1.2 31124 1k6dA 220 8.80e+00 unknown_sccs 72082 1b1cA 181 9.16e+00 1amoA c.23.5.2 31212 1p0kA 349 9.35e+00 c.1.4.1 87648 1dxy 333 1.08e+01 1dxy c.2.1.4 30094 c.23.12.1 31354 1eqjA 511 1.10e+01 1ejjA c.105.1.1 59495 c.76.1.3 59496 1evfA 264 1.11e+01 1bkpA d.117.1.1 40932 1hywA 68 1.13e+01 1hywA d.186.1.1 61425 1o22A 170 1.18e+01 d.238.1.1 86557 1uhvA 500 1.23e+01 b.71.1.2 -4683 c.1.8.3 -5354 1pswA 348 1.30e+01 c.87.1.7 88287 1t62A 166 1.39e+01 1ltoA 245 1.41e+01 b.47.1.2 84707 1lswA 131 1.55e+01 d.110.3.2 78181 1p1jA 533 1.60e+01 c.2.1.3 87687 d.81.1.3 87688 1nktA 922 1.67e+01 a.162.1.1 85830 a.172.1.1 85831 c.37.1.19 85832 c.37.1.19 85833 1o98A 511 1.67e+01 c.105.1.1 86684 c.76.1.3 86685 1havA 217 1.68e+01 1havA b.47.1.4 26423 1smvA 260 1.68e+01 1smvA b.121.4.7 23288 1swuA 127 1.77e+01 1swuA b.61.1.1 27230 1m6eX 359 1.82e+01 unknown_sccs -8071 1k8kF 168 1.91e+01 d.198.2.1 68312 1ckiA 317 2.01e+01 1csn d.144.1.7 41660 1o4vA 183 2.07e+01 c.23.8.1 86628 1inp 400 2.07e+01 1inp e.7.1.1 42972 1vi1A 345 2.12e+01 unknown_sccs -8466 1devB 41 2.13e+01 1devB j.64.1.1 46354 1cqkA 101 2.37e+01 1cqkA b.1.1.2 21547 1fa8A 135 2.37e+01 1qipA d.32.1.1 38486 1cydA 244 2.38e+01 1cydA c.2.1.2 29825 1kwmA 402 2.48e+01 c.56.5.1 73079 d.58.3.1 73080 1qnnA 191 2.53e+01 1avmA a.2.11.1 15792 d.44.1.1 38755 1nnwA 252 2.58e+01 d.159.1.5 80674 1spvA 184 2.61e+01 c.50.1.2 -7937 1i8kA 107 2.64e+01 b.1.1.1 71130 1whsA 255 2.68e+01 1ivyA c.69.1.5 34649 1csn 298 2.68e+01 1csn d.144.1.7 41664 1oejA 193 2.69e+01 unknown_sccs -4461 1p35A 299 2.74e+01 1p35A b.28.1.1 23925 1jb3A 131 2.75e+01 1jc7A b.40.3.2 62833 1b06A 210 2.77e+01 1avmA a.2.11.1 15740 d.44.1.1 38737 1j1yA 136 2.83e+01 d.38.1.5 -9671 1ja1A 622 2.85e+01 1amoA b.43.4.1 62803 c.23.5.2 62804 c.25.1.4 62805 1iakA 199 2.88e+01 1iakA b.1.1.2 21625 d.19.1.1 38199 1o9iA 266 2.96e+01 unknown_sccs -698 1jkvA 266 2.96e+01 unknown_sccs 71719 1ks9A 291 3.16e+01 a.100.1.7 68857 c.2.1.6 68858 1stfI 98 3.16e+01 1stfI d.17.1.2 38006 1s72Q 96 3.20e+01 1frrA 95 3.23e+01 1awd d.15.4.1 37674 2polA 366 3.27e+01 2polA d.131.1.1 41356 d.131.1.1 41357 d.131.1.1 41358 1ggxA 223 3.27e+01 1ggxA d.22.1.1 38367 1ax4A 467 3.29e+01 1ax4A c.67.1.2 34391 1jj2P 95 3.32e+01 1ffkN b.34.5.1 63101 1uesA 191 3.33e+01 1kzlA 208 3.39e+01 b.43.4.3 77635 b.43.4.3 77636 1cz4A 185 3.40e+01 1cz4A b.52.2.3 26934 d.31.1.1 38468 1ri5A 298 3.40e+01 unknown_sccs -8063 1o91A 178 3.44e+01 b.22.1.1 -3282 2cpl 165 3.44e+01 2cpl b.62.1.1 27420 1qqqA 264 3.49e+01 1bkpA d.117.1.1 40931 1miuA 738 3.51e+01 a.170.1.1 79153 a.171.1.1 79154 b.40.4.3 79155 b.40.4.3 79156 b.40.4.3 79157 1txlA 215 3.51e+01 1f1xA 322 3.58e+01 d.32.1.3 83208 d.32.1.3 83209 1ytw 306 3.59e+01 1ytw c.45.1.2 32689 1whtA 256 3.63e+01 1ivyA c.69.1.5 34646 2bltA 361 3.67e+01 1gceA e.3.1.1 42739 1gmxA 108 3.69e+01 c.46.1.3 65355 1mgtA 174 3.82e+01 1mgtA a.4.2.1 16078 c.55.7.1 33753 1f9zA 135 3.88e+01 1qipA d.32.1.1 38484 1i0hA 205 3.93e+01 1avmA a.2.11.1 15760 d.44.1.1 38685 1ix9A 205 3.93e+01 a.2.11.1 76899 d.44.1.1 76900