# List of top-scoring protein chains for t04-100-30-bys hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rz1A 161 8.43e-25 b.45.1.2 -4088 1ejeA 192 3.30e-22 1ejeA b.45.1.2 25757 1uscA 178 8.00e-21 b.45.1.2 -4074 1i0rA 169 1.01e-20 1i0rA b.45.1.2 61489 1i0sA 169 1.45e-20 1i0rA b.45.1.2 61491 1d1gA 168 3.88e-02 1d1gA c.71.1.1 34889 1rxxA 421 8.14e-02 unknown_sccs -10982 1fhgA 154 1.15e-01 1tlk b.1.1.4 21706 1ne2A 200 1.56e-01 c.66.1.32 85586 1go3E 187 7.54e-01 b.40.4.5 83054 d.230.1.1 83055 1tlk 154 7.58e-01 1tlk b.1.1.4 21707 1krhA 338 9.35e-01 b.43.4.2 72891 c.25.1.2 72892 d.15.4.2 72893 1s9rA 410 1.12e+00 unknown_sccs -10989 1p6oA 161 1.38e+00 c.97.1.2 -8774 1smvA 260 1.55e+00 1smvA b.121.4.7 23288 1mkyA 439 1.65e+00 c.37.1.8 79250 c.37.1.8 79251 d.52.5.1 79252 1vcaA 202 1.76e+00 1vcaA b.1.1.3 21649 b.1.1.4 21685 1ax4A 467 2.22e+00 1ax4A c.67.1.2 34391 1hxs1 302 2.40e+00 1flmA 122 2.66e+00 1axj b.45.1.1 25747 1zpdA 568 2.67e+00 1zpdA c.31.1.3 31741 c.36.1.5 31785 c.36.1.9 31786 1i3cA 149 2.84e+00 c.23.1.1 71112 1dcfA 136 2.89e+00 1dcfA c.23.1.2 31124 1i58A 189 3.09e+00 1b3qA d.122.1.3 61773 1mngA 203 3.53e+00 1avmA a.2.11.1 15776 d.44.1.1 38701 1pjqA 457 3.60e+00 c.2.1.11 -5904 c.90.1.1 -8611 e.37.1.1 -12004 1c4eA 35 3.93e+00 1c4eA g.3.4.1 44080 1ooeA 236 4.06e+00 c.2.1.2 87196 1jb3A 131 4.28e+00 1jc7A b.40.3.2 62833 1ytw 306 4.41e+00 1ytw c.45.1.2 32689 1cydA 244 4.63e+00 1cydA c.2.1.2 29825 1o98A 511 4.75e+00 c.105.1.1 86684 c.76.1.3 86685 1gmxA 108 4.78e+00 c.46.1.3 65355 1eqjA 511 5.22e+00 1ejjA c.105.1.1 59495 c.76.1.3 59496 1quqB 121 5.25e+00 1quqB b.40.4.3 25305 1e19A 314 5.62e+00 1b7bA c.73.1.1 34967 1cuk 203 5.80e+00 1hjp a.5.1.1 16273 a.60.2.1 17946 b.40.4.2 25265 1ekeA 230 6.12e+00 1ekeA c.55.3.1 33572 1jdw 423 6.29e+00 1jdw d.126.1.2 41129 1f06A 320 6.99e+00 1dapA c.2.1.3 59556 d.81.1.3 59557 1nox 205 7.92e+00 1nox d.90.1.1 40242 1k9sA 237 7.94e+00 c.56.2.1 68359 1iakA 199 8.47e+00 1iakA b.1.1.2 21625 d.19.1.1 38199 1zxq 192 8.51e+00 1zxq b.1.1.3 21657 b.1.1.4 21693 1devB 41 8.72e+00 1devB j.64.1.1 46354 1hywA 68 8.72e+00 1hywA d.186.1.1 61425 1iscA 192 8.89e+00 1avmA a.2.11.1 15733 d.44.1.1 38726 1jnyA 435 9.26e+00 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1fthA 122 1.01e+01 d.150.1.2 60028 1kkcA 221 1.02e+01 a.2.11.1 68660 d.44.1.1 68661 2bltA 361 1.06e+01 1gceA e.3.1.1 42739 1o8vA 134 1.07e+01 b.60.1.2 86680 1t0hB 224 1.07e+01 1pxvA 183 1.10e+01 d.3.1.1 -8881 1fs7A 485 1.14e+01 1qdbA a.138.1.3 19691 1nx8A 273 1.25e+01 b.82.2.8 86374 1my6A 199 1.28e+01 a.2.11.1 85232 d.44.1.1 85233 1h1wA 289 1.31e+01 d.144.1.7 83460 1o13A 136 1.33e+01 c.55.5.1 80762 3hhrB 203 1.36e+01 1axiB b.1.2.1 22005 b.1.2.1 22006 1vjuA 309 1.37e+01 unknown_sccs -9594 1gmlA 178 1.47e+01 c.8.5.2 70273 1din 236 1.53e+01 1din c.69.1.9 34682 1twiA 434 1.59e+01 1ecpA 238 1.63e+01 1ecpA c.56.2.1 33775 1ha3A 405 1.65e+01 1efcA b.43.3.1 60869 b.44.1.1 60870 c.37.1.8 60871 1iqoA 88 1.65e+01 d.214.1.1 71277 1vhsA 175 1.67e+01 d.108.1.1 -10794 1r9hA 135 1.68e+01 d.26.1.1 -9482 1nzhA 282 1.69e+01 d.151.1.2 -11398 1j9bA 141 1.69e+01 c.47.1.12 66459 1kzyC 259 1.72e+01 c.15.1.4 73383 c.15.1.4 73384 1l9xA 315 1.77e+01 c.23.16.1 73762 1iq6A 134 1.77e+01 d.38.1.4 76755 1ok8A 394 1.80e+01 b.1.18.4 -2737 f.10.1.1 -12384 1kwmA 402 1.82e+01 c.56.5.1 73079 d.58.3.1 73080 1lyvA 306 1.87e+01 c.45.1.2 74348 1ad3A 452 1.88e+01 1ad3A c.82.1.1 35335 1fyxA 149 1.91e+01 1fyvA c.23.2.1 31128 1pswA 348 1.91e+01 c.87.1.7 88287 1bg2 325 1.91e+01 1bg2 c.37.1.9 32189 1n5dA 288 1.96e+01 c.2.1.2 80030 2bbkH 355 2.03e+01 2bbkH b.69.2.1 27634 1n57A 291 2.03e+01 c.23.16.2 85328 1n2zA 245 2.06e+01 c.92.2.2 79865 1rgyA 360 2.07e+01 e.3.1.1 -11768 1hu4A 288 2.11e+01 1hu4A 1l0wA 580 2.15e+01 b.40.4.1 73426 d.74.4.1 73427 d.104.1.1 73428 1uzxA 169 2.19e+01 d.20.1.2 -9409 1sl4A 155 2.21e+01 1n1bA 549 2.22e+01 a.102.4.1 79799 a.128.1.3 79800 1toaA 313 2.28e+01 1toaA c.92.2.2 35598 1uj6A 227 2.30e+01 1eg5A 384 2.33e+01 1ecxA c.67.1.3 34429 1igs 248 2.35e+01 1a53 c.1.2.4 28565 1a53 247 2.35e+01 1a53 c.1.2.4 28564 1uu3A 310 2.36e+01 d.144.1.7 -11339 5ukdA 194 2.39e+01 1zin c.37.1.1 31851 1i24A 404 2.41e+01 c.2.1.2 83663 1gt1A 159 2.44e+01 b.60.1.1 -4436 1obpA 159 2.48e+01 1obpA b.60.1.1 27092 1hn2A 159 2.57e+01 b.60.1.1 65890 1e58A 249 2.59e+01 1qhfA c.60.1.1 59262 1pfsA 78 2.59e+01 1pfsA b.40.4.7 25391 1b1cA 181 2.67e+01 1amoA c.23.5.2 31212 1bdo 80 2.77e+01 1bdo b.84.1.1 28214 1oaiA 59 2.80e+01 a.5.2.3 81255 1a9xB 379 2.80e+01 1c3oB c.8.3.1 30732 c.23.16.1 31409 1ixlA 131 2.84e+01 d.38.1.5 -9705 1iirA 415 2.86e+01 1iirA c.87.1.5 62453 1poiA 317 2.91e+01 1poiA unknown_sccs 34153 1kk1A 410 2.91e+01 b.43.3.1 72634 b.44.1.1 72635 c.37.1.8 72636 1lrzA 426 3.15e+01 a.2.7.4 78167 d.108.1.4 78168 d.108.1.4 78169 1stfI 98 3.17e+01 1stfI d.17.1.2 38006 1cqqA 180 3.19e+01 1cqqA b.47.1.4 26422 1i36A 264 3.22e+01 a.100.1.8 71108 c.2.1.6 71109 1jcfA 344 3.28e+01 c.55.1.1 62878 c.55.1.1 62879 1i2kA 269 3.28e+01 e.17.1.1 -11995 1o8uA 257 3.29e+01 c.14.1.3 81194 1szoA 257 3.32e+01 1nn6A 228 3.32e+01 b.47.1.2 85893 1gl4A 285 3.34e+01 d.22.1.2 65286 g.3.11.5 65287 1j3mA 129 3.38e+01 1q8iA 783 3.38e+01 c.55.3.5 -7635 e.8.1.1 -11885 1mgtA 174 3.47e+01 1mgtA a.4.2.1 16078 c.55.7.1 33753 1qrrA 394 3.49e+01 1qrrA c.2.1.2 29824 1sviA 195 3.51e+01 1mh1 186 3.54e+01 1eesA c.37.1.8 32002 1kzlA 208 3.59e+01 b.43.4.3 77635 b.43.4.3 77636 1gdvA 85 3.62e+01 1ctj a.3.1.1 60458 1j0sA 157 3.69e+01 b.42.1.2 -4016 1pwhA 327 3.73e+01 c.79.1.1 -8524 2pgd 482 3.75e+01 2pgd a.100.1.1 18778 c.2.1.6 30190 1a3c 181 3.84e+01 1a3c c.61.1.1 34095 2dkb 433 3.92e+01 2dkb c.67.1.4 34438 1qf9A 194 3.96e+01 1zin c.37.1.1 31848 1mho 88 4.00e+01 1b4cA a.39.1.2 17171