# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1rz1A	161	5.44e-18		b.45.1.2	-4088
1ejeA	192	5.71e-17	1ejeA	b.45.1.2	25757
1uscA	178	4.76e-15		b.45.1.2	-4074
1i0sA	169	1.11e-14	1i0rA	b.45.1.2	61491
1i0rA	169	1.63e-14	1i0rA	b.45.1.2	61489
1khdA	345	1.23e+00		a.46.2.1	77400
				c.27.1.1	77401
1j1tA	233	3.32e+00		unknown_sccs	-3462
1zpdA	568	4.29e+00	1zpdA	c.31.1.3	31741
				c.36.1.5	31785
				c.36.1.9	31786
1b1cA	181	8.05e+00	1amoA	c.23.5.2	31212
1fthA	122	9.34e+00		d.150.1.2	60028
1jilA	420	9.98e+00		c.26.1.1	66745
1p5dX	463	1.01e+01		c.84.1.1	-8554
				c.84.1.1	-8555
				c.84.1.1	-8556
				d.129.2.1	-11029
1k2yX	463	1.05e+01		c.84.1.1	68063
				c.84.1.1	68064
				c.84.1.1	68065
				d.129.2.1	68066
1lk9A	448	1.12e+01		c.67.1.1	78057
1nqcA	217	1.25e+01		d.3.1.1	86024
1l5oA	356	1.59e+01		c.39.1.1	77711
1g0oA	283	1.74e+01	1ybvA	c.2.1.2	60181
1rypJ	204	1.92e+01		d.153.1.4	41878
1bmtA	246	2.02e+01	1bmtA	a.46.1.1	17757
				c.23.6.1	31235
1i4wA	353	2.07e+01		c.66.1.24	66028
1d0vA	356	2.07e+01	1d0vA	c.39.1.1	32476
1pxvA	183	2.34e+01		d.3.1.1	-8881
1s48A	609	2.42e+01		e.8.1.4	-11955
1ac5	483	2.46e+01	1ac5	c.69.1.5	34653
1n5dA	288	2.53e+01		c.2.1.2	80030
1hu4A	288	2.53e+01	1hu4A		
1iow	306	2.65e+01	1iow	c.30.1.2	31713
				d.142.1.1	41481
1dywA	173	2.70e+01	2cpl	b.62.1.1	27505
1bg2	325	2.71e+01	1bg2	c.37.1.9	32189
8dfr	189	2.75e+01	1aoeA	c.71.1.1	34895
1fecA	490	2.88e+01	3grs	c.3.1.5	30489
				c.3.1.5	30490
				d.87.1.1	40176
1ne2A	200	2.92e+01		c.66.1.32	85586
1e6yB	433	3.02e+01	1mroB	a.89.1.1	18535
				d.58.31.2	39453
1rxxA	421	3.06e+01		unknown_sccs	-10982
1si2A	149	3.13e+01			
1iuqA	367	3.38e+01		c.112.1.1	-8440
1izcA	339	3.48e+01		c.1.12.5	83838
1k30A	368	3.57e+01		c.112.1.1	68067
1gcvA	140	3.58e+01	1cg5B	a.1.1.2	15410
1cz4A	185	3.60e+01	1cz4A	b.52.2.3	26934
				d.31.1.1	38468
1nd4A	264	3.66e+01		d.144.1.6	-11381
1cipA	353	3.67e+01	1cipA	a.66.1.1	18210
				c.37.1.8	32093
1uasA	362	3.73e+01		b.71.1.1	88388
				c.1.8.1	88389
1kwmA	402	3.79e+01		c.56.5.1	73079
				d.58.3.1	73080
1tlk	154	3.96e+01	1tlk	b.1.1.4	21707