CreatePredAlphaCost pred_alpha2k alpha11 T0273.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0273.t04.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 15 near_backbone 5 way_back 5 dry5 15 dry6.5 20 dry8 15 dry12 5 \
	phobic_fit 2 \
	sidechain 1 \
	bystroff 5 \
	soft_clashes 10  backbone_clashes 2 \
	break 20  \
	pred_alpha2k 5 \
	pred_alpha04 1 \
	constraints 10 \
	hbond_geom 1 \
	hbond_geom_backbone 1 \
	hbond_geom_beta 5 \
	hbond_geom_beta_pair 10

# from T0273.t2k.dssp-ehl2.constraints
HelixConstraint 	E13	R18	7.005
HelixConstraint 	G46	N60	7.175
HelixConstraint 	A101	R103	6.623
HelixConstraint 	P124	R136	7.143

StrandConstraint	W28	R30	6.589
StrandConstraint	G34	W37	7.397
StrandConstraint	V67	D70	6.108
StrandConstraint	A87	V90	7.84
StrandConstraint	A113	V117	7.976
StrandConstraint	L141	V145	8.262
StrandConstraint	A151	F155	8.72
StrandConstraint	L162	R163	6.027
StrandConstraint	A180	S182	6.386

# file generated by validate2rr
# based on 280 inputs
# using the /projects/compbio/experiments/protein-predict/casp6/networks/NN280-240n300.net.28 network
# limited to score of .30 or greater.
# The score is an approximation of the probability
Constraint V143.CB V154.CB -10. 7.0 14.0 0.91
Constraint L127.CB L144.CB -10. 7.0 14.0 0.78
Constraint G42.CA R118.CB -10. 7.0 14.0 0.605
Constraint L16.CB L36.CB -10. 7.0 14.0 0.596 bonus
Constraint R30.CB R92.CB -10. 7.0 14.0 0.585 bonus
Constraint P40.CB S72.CB -10. 7.0 14.0 0.582 bonus
Constraint L56.CB V90.CB -10. 7.0 14.0 0.579 bonus
Constraint L135.CB P157.CB -10. 7.0 14.0 0.567 bonus
Constraint T73.CB A113.CB -10. 7.0 14.0 0.549 bonus
Constraint L141.CB L176.CB -10. 7.0 14.0 0.54 bonus
Constraint W59.CB F106.CB -10. 7.0 14.0 0.537 bonus
Constraint V11.CB A88.CB -10. 7.0 14.0 0.534 bonus
Constraint S49.CB V117.CB -10. 7.0 14.0 0.525 bonus
Constraint A110.CB V139.CB -10. 7.0 14.0 0.517 bonus
Constraint L56.CB A88.CB -10. 7.0 14.0 0.514 bonus
Constraint A113.CB V143.CB -10. 7.0 14.0 0.508 bonus
Constraint V114.CB V139.CB -10. 7.0 14.0 0.505 bonus
Constraint Q51.CB L162.CB -10. 7.0 14.0 0.505 bonus
Constraint V139.CB L162.CB -10. 7.0 14.0 0.502 bonus
Constraint S84.CB P177.CB -10. 7.0 14.0 0.502 bonus
Constraint G46.CA P157.CB -10. 7.0 14.0 0.502 bonus
Constraint E13.CB L162.CB -10. 7.0 14.0 0.502 bonus
Constraint V90.CB V145.CB -10. 7.0 14.0 0.498 bonus
Constraint V90.CB V143.CB -10. 7.0 14.0 0.498 bonus
Constraint T73.CB A88.CB -10. 7.0 14.0 0.498 bonus
Constraint A113.CB L141.CB -10. 7.0 14.0 0.486 bonus
Constraint S71.CB F106.CB -10. 7.0 14.0 0.483 bonus
Constraint L16.CB V90.CB -10. 7.0 14.0 0.483 bonus
Constraint E13.CB Q51.CB -10. 7.0 14.0 0.481 bonus
Constraint V11.CB F89.CB -10. 7.0 14.0 0.481 bonus
Constraint Q122.CB G142.CA -10. 7.0 14.0 0.478 bonus
Constraint A88.CB L98.CB -10. 7.0 14.0 0.478 bonus
Constraint A88.CB L176.CB -10. 7.0 14.0 0.475 bonus