# List of top-scoring protein chains for T0273.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1czyA 168 4.29e-01 1d0aB b.8.1.1 23220 h.1.2.1 45427 1f3vB 171 4.30e-01 1d0aB b.8.1.1 23237 h.1.2.1 45444 1czzA 187 4.41e-01 1d0aB b.8.1.1 23259 h.1.2.1 45466 1d00A 168 6.34e-01 1d0aB b.8.1.1 23229 h.1.2.1 45436 1qscA 191 6.56e-01 1d0aB b.8.1.1 23250 h.1.2.1 45457 1ca9A 192 6.58e-01 1d0aB b.8.1.1 23244 h.1.2.1 45451 1p32A 209 2.28e+00 1p32A d.25.1.1 38379 1ezwA 349 2.43e+00 1ezwA c.1.16.3 29558 1i9sA 210 4.62e+00 1i9sA c.45.1.1 62099 1py9A 116 7.33e+00 b.1.1.1 -2320 1lqbC 162 7.78e+00 b.3.3.1 74186 1lm8V 160 7.80e+00 b.3.3.1 74035 1onkA 254 8.19e+00 d.165.1.1 -11542 4nosA 427 9.31e+00 1nseA d.174.1.1 42516 1ho1A 242 9.37e+00 1ho1A c.1.24.1 61097 1nsiA 431 9.38e+00 1nseA d.174.1.1 42522 1m5wA 243 9.41e+00 c.1.24.1 84836 1m2tA 254 9.49e+00 d.165.1.1 84761 1abrA 251 1.02e+01 1mrj d.165.1.1 42196 1nos 388 1.10e+01 1nseA d.174.1.1 42496 1dd7A 389 1.10e+01 1nseA d.174.1.1 42497 1jwkA 434 1.10e+01 d.174.1.1 67387 1jwjA 433 1.11e+01 d.174.1.1 67385 1m8dA 434 1.11e+01 d.174.1.1 74581 1n2nA 419 1.11e+01 d.174.1.1 79855 1dwvA 420 1.11e+01 1nseA d.174.1.1 42501 1df1A 423 1.11e+01 1nseA d.174.1.1 42499 1qomA 440 1.11e+01 1nseA d.174.1.1 42514 1pumA 249 1.16e+01 1oqlA 249 1.18e+01 d.165.1.1 87306 1qz3A 310 1.20e+01 c.69.1.2 -8295 1l3gA 136 1.20e+01 d.34.1.1 77675 1pkoA 139 1.22e+01 b.1.1.1 88147 1p85H 142 1.30e+01 i.1.1.1 87877 1puuA 249 1.31e+01 1evqA 310 1.39e+01 1jkmA c.69.1.2 34635 1sltA 134 1.42e+01 1c1lA b.29.1.3 24186 1p5sA 203 1.44e+01 a.40.1.1 -900 1g291 372 1.47e+01 1g291 1p2xA 159 1.49e+01 1ew4A 106 1.49e+01 1ew4A d.82.2.1 40023 1mhdA 132 1.67e+01 1mhdA d.164.1.1 42175 1ozjA 144 1.79e+01 d.164.1.1 -11537 1eah1 301 2.02e+01 1pov1 1ob3A 288 2.05e+01 d.144.1.7 -11283 1ddhA 274 2.09e+01 1agdA b.1.1.2 20845 d.19.1.1 38312 1fnnA 389 2.10e+01 1fnnA a.4.5.11 16129 c.37.1.20 32426 1d6tA 117 2.10e+01 1a6f d.14.1.2 37565 1hdgO 332 2.12e+01 1dssG c.2.1.3 29990 d.81.1.1 39905 1t82A 155 2.12e+01 1ui0A 205 2.15e+01 c.18.1.2 -6328 1dk0A 188 2.25e+01 1b2vA d.35.1.1 38530 1bt3A 345 2.30e+01 1bt3A a.86.1.2 18507 1v0oA 288 2.31e+01 d.144.1.7 -11287 1pk5A 248 2.44e+01 a.123.1.1 88139 1riqA 465 2.45e+01 unknown_sccs -1295 d.104.1.1 -10769 1fit 147 2.54e+01 1fit d.13.1.1 37499 1by4A 82 2.56e+01 2nllB g.39.1.2 45110 1dszB 85 2.60e+01 2nllB g.39.1.2 45108 1vhsA 175 2.62e+01 d.108.1.1 -10794 1im4A 221 2.72e+01 unknown_sccs 62581 1f1xA 322 2.80e+01 d.32.1.3 83208 d.32.1.3 83209 1v0bA 288 2.93e+01 d.144.1.7 -11285 2fhi 147 3.02e+01 1fit d.13.1.1 37505 1qo3A 277 3.08e+01 1agdA b.1.1.2 20841 d.19.1.1 38310 1r76A 408 3.15e+01 1f1uA 323 3.17e+01 d.32.1.3 83200 d.32.1.3 83201 1cjaA 342 3.19e+01 1cjaA d.144.1.3 41708 1h1oA 183 3.30e+01 a.3.1.4 83454 a.3.1.4 83455 1r0nA 81 3.35e+01 g.39.1.2 -12725 1q0rA 298 3.36e+01 unknown_sccs -8330 1r0oA 86 3.38e+01 g.39.1.2 -12732 2prd 174 3.56e+01 2prd b.40.5.1 25435 1k1sA 354 3.57e+01 unknown_sccs -10207 unknown_sccs -11917 1rxr 83 3.80e+01 2nllB g.39.1.2 45114 1h6hA 143 3.85e+01 d.189.1.1 65681 1enwA 114 3.90e+01 1enwA a.5.4.1 16291 1ox8A 107 3.95e+01 unknown_sccs -3796 1dcnA 433 3.97e+01 1auwA a.127.1.1 19420 1ox9A 108 3.97e+01 unknown_sccs -3788