# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1mumA 295 3.42e-01 c.1.12.7 85108 1ho1A 242 1.07e+00 1ho1A c.1.24.1 61097 1szoA 257 1.84e+00 1o8uA 257 2.03e+00 c.14.1.3 81194 1p32A 209 2.47e+00 1p32A d.25.1.1 38379 1jkmA 358 2.69e+00 1jkmA c.69.1.2 34633 1umgA 362 2.73e+00 1p32C 209 2.80e+00 1p32A d.25.1.1 38381 1ezwA 349 3.67e+00 1ezwA c.1.16.3 29558 1vkdA 338 3.92e+00 1kczA 413 4.42e+00 c.1.11.2 68451 d.54.1.1 68452 1un7A 400 4.64e+00 b.92.1.5 -5077 c.1.9.10 -5429 1f1xA 322 5.11e+00 d.32.1.3 83208 d.32.1.3 83209 1g291 372 5.84e+00 1g291 1pgx 83 5.91e+00 2igd d.15.7.1 37823 1abrA 251 5.91e+00 1mrj d.165.1.1 42196 1f1uA 323 6.11e+00 d.32.1.3 83200 d.32.1.3 83201 1psuA 140 7.15e+00 d.38.1.5 88285 1mvfD 82 7.32e+00 b.129.1.1 85143 1m5wA 243 7.51e+00 c.1.24.1 84836 1tljA 213 7.61e+00 1o5zA 442 7.65e+00 c.59.1.2 -7939 c.72.2.2 -8418 1s96A 219 7.77e+00 c.37.1.1 -6972 1jkmB 361 8.05e+00 1jkmA c.69.1.2 34634 1rlhA 173 8.19e+00 unknown_sccs -10786 1pkoA 139 8.53e+00 b.1.1.1 88147 1az3A 244 8.64e+00 1rvaA c.52.1.2 33276 1sx5A 244 8.73e+00 c.52.1.2 -7551 1igd 61 9.70e+00 2igd d.15.7.1 37822 2igd 61 9.70e+00 2igd d.15.7.1 37821 1cjaA 342 1.00e+01 1cjaA d.144.1.3 41708 1kkoA 413 1.01e+01 c.1.11.2 68675 d.54.1.1 68676 2reb 352 1.05e+01 2reb c.37.1.11 32282 d.48.1.1 38767 3nodB 423 1.10e+01 1nseA d.174.1.1 42513 2rveA 244 1.11e+01 1rvaA c.52.1.2 33283 1rvaA 244 1.13e+01 1rvaA c.52.1.2 33240 1eonA 245 1.19e+01 1rvaA c.52.1.2 33238 1mg7A 417 1.20e+01 d.14.1.6 84954 d.58.26.6 84955 1h8uA 117 1.20e+01 1h8uA d.169.1.1 60793 1su4A 994 1.22e+01 b.82.7.1 -4927 c.108.1.7 -6854 d.220.1.1 -11668 f.33.1.1 -12333 1nf3C 128 1.40e+01 b.36.1.1 85596 1juk 248 1.53e+01 1a53 c.1.2.4 28567 1dp0A 1023 1.54e+01 b.1.4.1 22073 b.1.4.1 22074 b.18.1.5 23722 b.30.5.1 24346 c.1.8.3 28845 1igs 248 1.56e+01 1a53 c.1.2.4 28565 1cnv 299 1.58e+01 1cnv c.1.8.5 28989 1vk3A 615 1.60e+01 d.79.4.1 -10416 d.79.4.1 -10417 d.139.1.1 -11154 d.139.1.1 -11155 1v7rA 186 1.63e+01 c.51.4.1 -7546 1nm2A 317 1.64e+01 c.19.1.1 80654 d.58.23.1 80655 1ck7A 631 1.75e+01 1ck7A a.20.1.2 58969 b.66.1.1 27538 d.92.1.11 58970 g.14.1.2 44674 g.14.1.2 44675 g.14.1.2 44676 1s2wA 295 1.78e+01 c.1.12.7 -5577 1pzxA 289 1.80e+01 c.119.1.1 -8623 1cxvA 164 1.91e+01 1ck7A d.92.1.11 40404 1l2tA 235 1.92e+01 c.37.1.12 73514 1q9uA 130 1.94e+01 unknown_sccs -11025 1eulA 994 1.95e+01 1eulA 1a53 247 2.00e+01 1a53 c.1.2.4 28564 1dekA 241 2.03e+01 1dekA c.37.1.1 31842 1qatB 622 2.05e+01 1djxB a.39.1.7 17355 b.7.1.1 23172 c.1.18.1 29600 1lshA 1056 2.05e+01 a.118.4.1 74242 f.7.1.1 74243 f.7.1.1 74244 1qm9A 198 2.12e+01 1qm9A d.58.7.1 39207 d.58.7.1 39208 1mnmA 100 2.15e+01 1mnmA d.88.1.1 40232 1vh5A 148 2.20e+01 d.38.1.5 -9677 1a78A 134 2.20e+01 1c1lA b.29.1.3 24212 1sqzA 121 2.22e+01 a.133.1.2 -1971 1tk4A 121 2.22e+01 1tj9A 121 2.27e+01 1fv0A 121 2.28e+01 a.133.1.2 70147 1kpmA 121 2.28e+01 a.133.1.2 72844 1o20A 427 2.32e+01 c.82.1.1 86556 1s72E 178 2.33e+01 1g8pA 350 2.35e+01 1g8pA c.37.1.20 60376 1mhxA 65 2.48e+01 d.15.7.1 79134 1rm4A 337 2.59e+01 1vizA 240 2.61e+01 c.1.4.1 -5212 830cA 168 2.64e+01 1ck7A d.92.1.11 40400 1p9oA 313 2.65e+01 unknown_sccs -8423 1pymA 295 2.81e+01 1pymA c.1.12.7 29308 1a04A 215 2.87e+01 1a04A a.4.6.2 16234 c.23.1.1 31089 1e5xA 486 2.88e+01 c.79.1.1 59283 1bxdA 161 2.89e+01 1bxdA d.122.1.3 41111 1qgwA 76 2.91e+01 1qgwA d.184.1.1 42616 1b25A 619 3.02e+01 1b25A a.110.1.1 19044 d.152.1.1 41796 1jj2E 177 3.06e+01 1ffk1 d.141.1.1 63089 d.141.1.1 63090 1hnoA 280 3.11e+01 1hnoA c.14.1.3 61095 1hnuA 280 3.14e+01 1hnoA c.14.1.3 61096 1n91A 108 3.21e+01 d.206.1.1 80326 1o50A 157 3.27e+01 d.37.1.1 -9604 d.37.1.1 -9605 1mxgA 435 3.33e+01 b.71.1.1 85193 c.1.8.1 85194 1imoA 88 3.37e+01 1imoA c.15.1.2 62590 4rhv3 236 3.39e+01 1aym3 1c3oE 1073 3.41e+01 a.92.1.1 18564 c.24.1.1 31493 c.30.1.1 31685 c.30.1.1 31686 d.142.1.2 41530 d.142.1.2 41531 1vhh 162 3.45e+01 1vhh d.65.1.2 39550 1l1yA 678 3.50e+01 a.102.1.2 73486 1t82A 155 3.56e+01 1lvwA 295 3.57e+01 c.68.1.6 84723 1hh1A 143 3.63e+01 1gefA c.52.1.18 61036