# List of top-scoring protein chains for T0273.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1uwyA 426 1.67e+00 b.3.2.1 -2923 c.56.5.1 -7863 4nosA 427 2.35e+00 1nseA d.174.1.1 42516 1nsiA 431 2.35e+00 1nseA d.174.1.1 42522 1ui0A 205 3.19e+00 c.18.1.2 -6328 1f3lA 321 3.73e+00 1g6q2 c.66.1.6 59630 1avaC 181 4.47e+00 1avaC b.42.4.1 25604 1l8bA 190 4.88e+00 d.86.1.1 73683 1ipc 217 5.32e+00 1djpA 330 5.46e+00 4pgaA c.88.1.1 35567 1ew4A 106 5.49e+00 1ew4A d.82.2.1 40023 4pgaA 337 5.49e+00 4pgaA c.88.1.1 35565 1jwkA 434 5.97e+00 d.174.1.1 67387 1jwjA 433 5.98e+00 d.174.1.1 67385 1dd7A 389 5.98e+00 1nseA d.174.1.1 42497 1nos 388 5.98e+00 1nseA d.174.1.1 42496 1n2nA 419 5.99e+00 d.174.1.1 79855 1dwvA 420 5.99e+00 1nseA d.174.1.1 42501 1m8dA 434 6.00e+00 d.174.1.1 74581 1df1A 423 6.00e+00 1nseA d.174.1.1 42499 1qomA 440 6.00e+00 1nseA d.174.1.1 42514 1hrnA 337 8.92e+00 1smrA b.50.1.2 26869 1m111 278 9.24e+00 1rne 340 9.67e+00 1smrA b.50.1.2 26871 1q7fA 286 1.03e+01 unknown_sccs -4599 1mmvA 419 1.09e+01 d.174.1.1 -11682 1p6iA 421 1.09e+01 d.174.1.1 -11690 1vagA 420 1.09e+01 1om4A 422 1.09e+01 d.174.1.1 87067 1p6kA 421 1.11e+01 d.174.1.1 -11694 1p5zB 263 1.25e+01 c.37.1.1 87815 1o20A 427 1.29e+01 c.82.1.1 86556 1mvfD 82 1.33e+01 b.129.1.1 85143 1ig8A 486 1.38e+01 2yhx c.55.1.3 64746 c.55.1.3 64747 1ub4C 85 1.44e+01 b.129.1.1 88401 1p32A 209 1.47e+01 1p32A d.25.1.1 38379 1gnc 178 1.50e+01 1bgc a.26.1.1 16821 1r76A 408 1.51e+01 1g8pA 350 1.52e+01 1g8pA c.37.1.20 60376 3pga1 337 1.54e+01 4pgaA 1dqiA 124 1.74e+01 1do6A b.1.13.1 22357 1mg2A 390 1.86e+01 b.69.2.1 79059 1fuyB 396 1.86e+01 2tysB c.79.1.1 35279 1p85H 142 1.87e+01 i.1.1.1 87877 1ki9A 192 1.90e+01 c.37.1.1 84404 1p3jA 217 1.98e+01 c.37.1.1 -6996 g.41.2.1 -12769 1abrA 251 2.03e+01 1mrj d.165.1.1 42196 1cov1 281 2.13e+01 1pov1 1h1oA 183 2.16e+01 a.3.1.4 83454 a.3.1.4 83455 1ri5A 298 2.21e+01 unknown_sccs -8063 2bbkH 355 2.36e+01 2bbkH b.69.2.1 27634 1ssmA 242 2.38e+01 1t82A 155 2.48e+01 1cd9A 175 2.52e+01 1bgc a.26.1.1 16815 1h8tA 292 2.55e+01 b.121.4.1 70920 1oxy 628 2.55e+01 1lla a.85.1.1 18486 a.86.1.1 18497 b.1.18.3 21862 1ll1 628 2.58e+01 1lla a.85.1.1 18488 a.86.1.1 18499 b.1.18.3 21864 1lla 628 2.58e+01 1lla a.85.1.1 18485 a.86.1.1 18496 b.1.18.3 21861 2prd 174 2.70e+01 2prd b.40.5.1 25435 2mtaH 373 2.72e+01 2bbkH b.69.2.1 27636 1h6hA 143 2.75e+01 d.189.1.1 65681 1iv1A 152 2.82e+01 d.79.5.1 76816 1ssqA 267 2.93e+01 1sstA 267 2.93e+01 1jatB 138 3.18e+01 1jatB d.20.1.1 62819 1dc1A 323 3.20e+01 1dc1A c.52.1.11 33321 1gzkA 315 3.25e+01 d.144.1.7 83406 3pmgA 561 3.31e+01 3pmgA c.84.1.1 35408 c.84.1.1 35409 c.84.1.1 35410 d.129.2.1 41301 1gznA 335 3.34e+01 d.144.1.7 83407 1o6kA 336 3.34e+01 d.144.1.7 81091 1mryA 339 3.35e+01 d.144.1.7 -11338 1oj4A 283 3.38e+01 d.14.1.5 -9088 d.58.26.5 -10133 1lqaA 346 3.45e+01 c.1.7.1 84674 1o6lA 337 3.50e+01 d.144.1.7 81092 1dceB 331 3.80e+01 1dceB a.102.4.3 18872 1up8A 598 3.84e+01 a.111.1.2 -1480 1bccD 241 3.97e+01 1be3D a.3.1.3 15959 f.23.11.1 43698