# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rvaA 244 6.57e-01 1rvaA c.52.1.2 33240 1eonA 245 6.60e-01 1rvaA c.52.1.2 33238 1sx5A 244 7.19e-01 c.52.1.2 -7551 1dp0A 1023 1.27e+00 b.1.4.1 22073 b.1.4.1 22074 b.18.1.5 23722 b.30.5.1 24346 c.1.8.3 28845 1g8pA 350 1.37e+00 1g8pA c.37.1.20 60376 1vh5A 148 2.47e+00 d.38.1.5 -9677 1s2wA 295 2.56e+00 c.1.12.7 -5577 1mumA 295 2.78e+00 c.1.12.7 85108 1pymA 295 2.96e+00 1pymA c.1.12.7 29308 1q74A 303 3.80e+00 unknown_sccs -8121 1jj2E 177 4.82e+00 1ffk1 d.141.1.1 63089 d.141.1.1 63090 1s72E 178 5.14e+00 1pqzA 238 5.73e+00 1skoB 130 5.77e+00 1bzyA 217 5.84e+00 1qk3A c.61.1.1 34071 1e44B 96 6.08e+00 1e44B b.101.1.1 59220 1skoA 143 6.38e+00 1o20A 427 6.73e+00 c.82.1.1 86556 1ri5A 298 6.87e+00 unknown_sccs -8063 1o0iA 138 6.99e+00 d.38.1.5 86532 1cr1A 296 7.34e+00 1cr1A c.37.1.11 32286 1jz8A 1023 7.67e+00 b.1.4.1 67830 b.1.4.1 67831 b.18.1.5 67832 b.30.5.1 67833 c.1.8.3 67834 2prd 174 7.77e+00 2prd b.40.5.1 25435 1iyeA 309 7.98e+00 e.17.1.1 83786 1nm2A 317 9.01e+00 c.19.1.1 80654 d.58.23.1 80655 1nf3C 128 1.02e+01 b.36.1.1 85596 1kutA 230 1.08e+01 d.143.1.1 73017 1b77A 228 1.13e+01 1b77A d.131.1.2 41362 d.131.1.2 41363 1reqA 727 1.16e+01 1reqA c.1.19.1 29620 c.23.6.1 31247 1q9uA 130 1.17e+01 unknown_sccs -11025 1m7vA 363 1.17e+01 d.174.1.1 78748 1i1kA 309 1.23e+01 1daaA e.17.1.1 61533 1ls1A 295 1.24e+01 a.24.13.1 78170 c.37.1.10 78171 1m7yA 435 1.52e+01 c.67.1.4 78761 1b6rA 355 1.52e+01 1b6rA b.84.2.1 28241 c.30.1.1 31648 d.142.1.2 41493 2igd 61 1.61e+01 2igd d.15.7.1 37821 1iznB 277 1.66e+01 e.43.1.2 83848 2ng1 293 1.67e+01 1ng1 a.24.13.1 16962 c.37.1.10 32273 1hc7A 477 1.69e+01 1hc7A c.51.1.1 60938 d.68.5.1 60940 d.104.1.1 60939 1o5hA 214 1.70e+01 unknown_sccs -1078 1lxjA 104 1.79e+01 d.58.48.1 84736 1b8gA 429 1.82e+01 1b8gA c.67.1.4 34499 1gxrA 337 1.85e+01 b.69.4.1 70722 1hh1A 143 1.88e+01 1gefA c.52.1.18 61036 1cliA 345 1.90e+01 1cliA d.79.4.1 39816 d.139.1.1 41459 1lqaA 346 2.02e+01 c.1.7.1 84674 1euwA 152 2.03e+01 1dupA b.85.4.1 28349 5reqA 727 2.12e+01 1reqA c.1.19.1 29632 c.23.6.1 31259 1odfA 290 2.19e+01 c.37.1.6 -7045 1gqiA 708 2.21e+01 c.1.8.10 76279 d.92.2.2 76280 1gqeA 365 2.30e+01 e.38.1.1 70351 1r4kA 169 2.31e+01 unknown_sccs -3625 1pwxA 254 2.33e+01 c.2.1.2 -5858 1jnyA 435 2.40e+01 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1sh8A 154 2.41e+01 1ssqA 267 2.42e+01 1b25A 619 2.56e+01 1b25A a.110.1.1 19044 d.152.1.1 41796 1mnaA 298 2.62e+01 c.69.1.22 79322 1h7mA 102 2.76e+01 d.79.3.1 83485 1oi7A 288 2.79e+01 c.2.1.8 87049 c.23.4.1 87050 1q7fA 286 2.87e+01 unknown_sccs -4599 1rxyA 253 3.00e+01 c.56.2.1 -7834 1ro0A 216 3.03e+01 unknown_sccs -11390 1oj4A 283 3.10e+01 d.14.1.5 -9088 d.58.26.5 -10133 1qusA 322 3.26e+01 1ltm d.2.1.6 36991 1lx7A 253 3.27e+01 c.56.2.1 74329 1mvfD 82 3.27e+01 b.129.1.1 85143 1ro2A 216 3.30e+01 unknown_sccs -11391 1qqqA 264 3.34e+01 1bkpA d.117.1.1 40931 1sdwA 314 3.39e+01 b.121.1.2 -3024 b.121.1.2 -3025 1bw0A 416 3.60e+01 1bw0A c.67.1.1 34385 1bif 469 3.63e+01 1bif c.37.1.7 31961 c.60.1.4 34003 1mg7A 417 3.64e+01 d.14.1.6 84954 d.58.26.6 84955 1k8wA 327 3.74e+01 b.122.1.1 83094 unknown_sccs -10143 1evfA 264 3.76e+01 1bkpA d.117.1.1 40932 1szoA 257 3.78e+01 1nhp 447 3.80e+01 1nhp c.3.1.5 30549 c.3.1.5 30550 d.87.1.1 40196 1rlhA 173 3.80e+01 unknown_sccs -10786 1vdwA 254 3.95e+01 e.7.1.1 -11868 1un7A 400 3.98e+01 b.92.1.5 -5077 c.1.9.10 -5429