# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vh5A 148 7.46e-02 d.38.1.5 -9677 1rvaA 244 1.23e-01 1rvaA c.52.1.2 33240 1sx5A 244 1.23e-01 c.52.1.2 -7551 1eonA 245 1.26e-01 1rvaA c.52.1.2 33238 1dp0A 1023 2.18e-01 b.1.4.1 22073 b.1.4.1 22074 b.18.1.5 23722 b.30.5.1 24346 c.1.8.3 28845 1b77A 228 3.54e-01 1b77A d.131.1.2 41362 d.131.1.2 41363 1s2wA 295 6.83e-01 c.1.12.7 -5577 1pymA 295 8.16e-01 1pymA c.1.12.7 29308 1o0iA 138 8.42e-01 d.38.1.5 86532 1bif 469 8.78e-01 1bif c.37.1.7 31961 c.60.1.4 34003 1m7yA 435 9.12e-01 c.67.1.4 78761 1hh1A 143 1.02e+00 1gefA c.52.1.18 61036 1qahA 136 1.04e+00 d.79.1.1 -10377 1lxjA 104 1.36e+00 d.58.48.1 84736 1jz8A 1023 1.53e+00 b.1.4.1 67830 b.1.4.1 67831 b.18.1.5 67832 b.30.5.1 67833 c.1.8.3 67834 1i1kA 309 2.06e+00 1daaA e.17.1.1 61533 1b8gA 429 2.21e+00 1b8gA c.67.1.4 34499 830cA 168 2.27e+00 1ck7A d.92.1.11 40400 1szoA 257 2.28e+00 1rxyA 253 2.34e+00 c.56.2.1 -7834 1mo9A 523 2.37e+00 c.3.1.5 79341 c.3.1.5 79342 d.87.1.1 79343 2igd 61 2.44e+00 2igd d.15.7.1 37821 1o8uA 257 2.51e+00 c.14.1.3 81194 1lx7A 253 2.59e+00 c.56.2.1 74329 1g8pA 350 2.64e+00 1g8pA c.37.1.20 60376 1gqiA 708 2.75e+00 c.1.8.10 76279 d.92.2.2 76280 1reqA 727 2.77e+00 1reqA c.1.19.1 29620 c.23.6.1 31247 1bzyA 217 2.87e+00 1qk3A c.61.1.1 34071 1e44B 96 2.96e+00 1e44B b.101.1.1 59220 1mumA 295 3.07e+00 c.1.12.7 85108 1iyeA 309 3.39e+00 e.17.1.1 83786 1oj4A 283 3.62e+00 d.14.1.5 -9088 d.58.26.5 -10133 1gxrA 337 3.78e+00 b.69.4.1 70722 1han 297 3.91e+00 1han d.32.1.3 38506 d.32.1.3 38507 1l2tA 235 4.07e+00 c.37.1.12 73514 1dhpA 292 4.10e+00 1dhpA c.1.10.1 29097 1oi7A 288 4.33e+00 c.2.1.8 87049 c.23.4.1 87050 1vk3A 615 4.79e+00 d.79.4.1 -10416 d.79.4.1 -10417 d.139.1.1 -11154 d.139.1.1 -11155 1skoA 143 4.84e+00 1vdwA 254 5.23e+00 e.7.1.1 -11868 1h7mA 102 5.36e+00 d.79.3.1 83485 5reqA 727 5.41e+00 1reqA c.1.19.1 29632 c.23.6.1 31259 1je0A 236 5.69e+00 c.56.2.1 66581 1sh8A 154 5.80e+00 1t35A 191 5.86e+00 unknown_sccs -7285 1b6rA 355 5.97e+00 1b6rA b.84.2.1 28241 c.30.1.1 31648 d.142.1.2 41493 1ezwA 349 5.97e+00 1ezwA c.1.16.3 29558 1qqqA 264 6.00e+00 1bkpA d.117.1.1 40931 2prd 174 6.03e+00 2prd b.40.5.1 25435 1oniA 137 6.12e+00 d.79.1.1 87144 1nulA 152 6.19e+00 1nulA c.61.1.1 34011 1cliA 345 6.31e+00 1cliA d.79.4.1 39816 d.139.1.1 41459 1p32A 209 6.51e+00 1p32A d.25.1.1 38379 1i7dA 659 6.98e+00 1d6mA e.10.1.1 61886 1evfA 264 7.04e+00 1bkpA d.117.1.1 40932 1q74A 303 7.85e+00 unknown_sccs -8121 1p9oA 313 8.15e+00 unknown_sccs -8423 1uanA 227 8.62e+00 unknown_sccs -8129 1f1uA 323 8.77e+00 d.32.1.3 83200 d.32.1.3 83201 1kkoA 413 8.80e+00 c.1.11.2 68675 d.54.1.1 68676 1pvtA 238 8.97e+00 c.74.1.1 -8444 1kutA 230 9.05e+00 d.143.1.1 73017 1aisA 182 9.41e+00 1ytbA d.129.1.1 41288 d.129.1.1 41289 1f1xA 322 9.72e+00 d.32.1.3 83208 d.32.1.3 83209 1o5hA 214 9.72e+00 unknown_sccs -1078 1pqzA 238 9.85e+00 1ho1A 242 9.98e+00 1ho1A c.1.24.1 61097 1ri5A 298 1.00e+01 unknown_sccs -8063 1pj5A 830 1.00e+01 unknown_sccs -4066 c.3.1.2 -6031 d.16.1.5 -9251 unknown_sccs -10171 1pfvA 551 1.05e+01 a.27.1.1 -727 c.26.1.1 -6603 g.41.1.1 -12765 1lqaA 346 1.05e+01 c.1.7.1 84674 1f4lA 551 1.05e+01 1qqtA a.27.1.1 59648 c.26.1.1 59649 g.41.1.1 59650 1mvfD 82 1.09e+01 b.129.1.1 85143 1oe1A 336 1.10e+01 b.6.1.3 86891 b.6.1.3 86892 1n35A 1267 1.16e+01 e.8.1.4 79935 1ta3B 303 1.16e+01 1n82A 331 1.23e+01 c.1.8.3 -5306 1t82A 155 1.23e+01 1lkdA 297 1.30e+01 d.32.1.3 78059 d.32.1.3 78060 1psuA 140 1.33e+01 d.38.1.5 88285 1r4kA 169 1.35e+01 unknown_sccs -3625 1q9uA 130 1.35e+01 unknown_sccs -11025 1su4A 994 1.36e+01 b.82.7.1 -4927 c.108.1.7 -6854 d.220.1.1 -11668 f.33.1.1 -12333 1v04A 355 1.38e+01 unknown_sccs -4592 1pztA 286 1.39e+01 c.68.1.2 -8213 1hl9A 449 1.40e+01 unknown_sccs -4694 unknown_sccs -5365 1skoB 130 1.43e+01 1fe7A 121 1.44e+01 1poa 1nhp 447 1.44e+01 1nhp c.3.1.5 30549 c.3.1.5 30550 d.87.1.1 40196 1nmmB 286 1.45e+01 c.68.1.2 80662 1tk4A 121 1.50e+01 1sqzA 121 1.51e+01 a.133.1.2 -1971 1s72E 178 1.52e+01 1l0wA 580 1.59e+01 b.40.4.1 73426 d.74.4.1 73427 d.104.1.1 73428 1cr1A 296 1.59e+01 1cr1A c.37.1.11 32286 1q42A 201 1.60e+01 d.17.4.2 -9292 1jnrA 643 1.61e+01 a.7.3.1 66966 c.3.1.4 66967 d.168.1.1 66968 1g94A 448 1.65e+01 b.71.1.1 65169 c.1.8.1 65170 1hc7A 477 1.66e+01 1hc7A c.51.1.1 60938 d.68.5.1 60940 d.104.1.1 60939 1tzbA 302 1.75e+01 1vizA 240 1.75e+01 c.1.4.1 -5212 1tj9A 121 1.81e+01 1k8wA 327 1.83e+01 b.122.1.1 83094 unknown_sccs -10143 3dni 260 1.84e+01 3dni d.151.1.1 41791 1iow 306 1.87e+01 1iow c.30.1.2 31713 d.142.1.1 41481 1exbA 332 1.92e+01 1qrqA c.1.7.1 28666 7a3hA 303 1.98e+01 7a3hA c.1.8.3 28817 1q7fA 286 1.98e+01 unknown_sccs -4599 1pf5A 131 2.00e+01 d.79.1.1 -10368 1nhs 447 2.00e+01 1nhp c.3.1.5 30555 c.3.1.5 30556 d.87.1.1 40199 1lv7A 257 2.02e+01 c.37.1.20 78232 1m5wA 243 2.03e+01 c.1.24.1 84836 1ogsA 497 2.12e+01 b.71.1.2 86997 c.1.8.3 86998 1pbuA 162 2.13e+01 d.58.46.1 88030 1j5yA 187 2.13e+01 a.4.5.1 71592 d.94.2.1 71593 1uyrA 737 2.15e+01 c.14.1.4 -6258 c.14.1.4 -6259 1ul7A 102 2.16e+01 unknown_sccs -11020 1sdwA 314 2.17e+01 b.121.1.2 -3024 b.121.1.2 -3025 1jysA 242 2.19e+01 c.56.2.1 77216 1nf3C 128 2.21e+01 b.36.1.1 85596 1b5qA 472 2.24e+01 1b37B c.3.1.2 30404 d.16.1.5 37968 1lqpA 135 2.27e+01 d.32.1.2 78151 1nkiA 135 2.27e+01 d.32.1.2 -9544 1cy9A 264 2.27e+01 1ecl e.10.1.1 43236 1gvfA 286 2.28e+01 c.1.10.2 70599 1odfA 290 2.35e+01 c.37.1.6 -7045 1mg7A 417 2.42e+01 d.14.1.6 84954 d.58.26.6 84955 1vjjA 692 2.43e+01 b.1.18.9 -2758 b.1.5.1 -2786 b.1.5.1 -2787 d.3.1.4 -8893 1nmoA 247 2.49e+01 unknown_sccs -8746 1gpr 162 2.53e+01 1gpr b.84.3.1 28267 2ebn 289 2.56e+01 2ebn c.1.8.5 28990 1o20A 427 2.58e+01 c.82.1.1 86556 1e58A 249 2.58e+01 1qhfA c.60.1.1 59262 1fg7A 356 2.61e+01 1gewA c.67.1.1 59819 1k0eA 453 2.61e+01 d.161.1.1 67938 1jj2E 177 2.65e+01 1ffk1 d.141.1.1 63089 d.141.1.1 63090 1qwgA 251 2.70e+01 unknown_sccs -5678 1lwjA 441 2.70e+01 b.71.1.1 74303 c.1.8.1 74304 1h3nA 878 2.73e+01 a.27.1.1 76641 b.51.1.1 76642 c.26.1.1 76643 1eudB 396 2.75e+01 2scuB c.23.4.1 31150 d.142.1.4 41571 1qopA 268 2.75e+01 2tysA c.1.2.4 28570 1ex0A 731 2.79e+01 b.1.18.9 -2754 b.1.5.1 -2778 b.1.5.1 -2779 d.3.1.4 -8889 1fxoA 293 2.85e+01 1g0rA c.68.1.6 34524 1j1yA 136 2.87e+01 d.38.1.5 -9671 1gefA 123 2.90e+01 1gefA c.52.1.18 60465 1m7xA 617 2.90e+01 b.1.18.2 78749 b.71.1.1 78750 c.1.8.1 78751 1np3A 338 2.94e+01 a.100.1.2 85946 c.2.1.6 85947 1o5zA 442 2.94e+01 c.59.1.2 -7939 c.72.2.2 -8418 1v93A 296 2.95e+01 c.1.23.1 -5654 1gewA 356 2.95e+01 1gewA c.67.1.1 60470 1eb6A 177 3.00e+01 d.92.1.12 64895 1qnrA 344 3.02e+01 1qnoA c.1.8.3 28834 1iv8A 720 3.02e+01 b.71.1.1 76842 c.1.8.1 76843 1fp1D 372 3.04e+01 1fpqA a.4.5.29 59939 c.66.1.12 59940 1ou8A 111 3.06e+01 unknown_sccs -3799 2dnjA 260 3.11e+01 3dni d.151.1.1 41790 1p0kA 349 3.14e+01 c.1.4.1 87648 1bw0A 416 3.14e+01 1bw0A c.67.1.1 34385 1gln 468 3.14e+01 1gln a.97.1.1 18752 c.26.1.1 31588 1vimA 200 3.18e+01 c.80.1.3 -8532 1fzrA 138 3.18e+01 1fzrA c.52.1.17 33336 1nq6A 302 3.20e+01 c.1.8.3 -5332 1evuA 731 3.20e+01 1f13A b.1.18.9 21883 b.1.5.1 22175 b.1.5.1 22176 d.3.1.4 37113 1fgs 428 3.21e+01 1fgs c.59.1.2 33959 c.72.2.2 34962 1si2A 149 3.23e+01 1tljA 213 3.23e+01 1aqm 453 3.24e+01 1smd b.71.1.1 27717 c.1.8.1 28704 1phm 310 3.29e+01 1phm b.121.1.2 59015 b.121.1.2 59016 1uq5A 263 3.30e+01 d.165.1.1 -11555 1pm3A 78 3.31e+01 unknown_sccs -3973 1kthA 58 3.34e+01 g.8.1.1 68863 2knt 58 3.34e+01 1bpi g.8.1.1 44537 1ih8A 271 3.34e+01 2nsyA c.26.2.1 62377 1q33A 292 3.34e+01 d.113.1.1 -10901 1kqpA 271 3.36e+01 c.26.2.1 72883 1tm0A 350 3.37e+01 1f52A 468 3.37e+01 1lgr d.15.9.1 37839 d.128.1.1 41169 1lmeA 176 3.39e+01 d.167.1.1 84629 1d7yA 408 3.45e+01 1d7yA c.3.1.5 30565 c.3.1.5 30566 d.87.1.1 40204 1rj9A 304 3.45e+01 a.24.13.1 -631 c.37.1.10 -7129 1o50A 157 3.46e+01 d.37.1.1 -9604 d.37.1.1 -9605 1b5tA 275 3.47e+01 1b5tA c.1.23.1 29676 1mmq 170 3.47e+01 1hfc d.92.1.11 40396 1pwxA 254 3.49e+01 c.2.1.2 -5858 1k68A 140 3.49e+01 c.23.1.1 -6403 1odkA 235 3.54e+01 c.56.2.1 86863 1sk4A 163 3.56e+01 1q1gA 276 3.60e+01 c.56.2.1 -7846 1khbA 625 3.66e+01 c.91.1.1 68606 c.109.1.1 68607 1l2uA 245 3.74e+01 c.1.2.3 73516 1fgxA 288 3.76e+01 1fgxA c.68.1.2 34508 1k32A 1045 3.77e+01 b.36.1.3 68068 b.68.7.1 68069 b.69.9.1 68070 c.14.1.2 68071 1g2oA 268 3.78e+01 1b8oA c.56.2.1 60228 1q7sA 117 3.90e+01 unknown_sccs -7522 2tysA 268 3.90e+01 2tysA c.1.2.4 28572 1tc1A 220 3.93e+01 1tc1A c.61.1.1 34083 1w1kA 560 3.97e+01