# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1e44B 96 3.32e-01 1e44B b.101.1.1 59220 1p32A 209 9.70e-01 1p32A d.25.1.1 38379 1fqiA 147 1.13e+00 1agrE a.91.1.1 18542 1oj4A 283 1.16e+00 d.14.1.5 -9088 d.58.26.5 -10133 1p3jA 217 1.48e+00 c.37.1.1 -6996 g.41.2.1 -12769 1jatB 138 2.00e+00 1jatB d.20.1.1 62819 1p5vA 235 2.09e+00 b.1.11.1 87812 b.7.2.1 87813 1auiB 169 2.14e+00 1auiB a.39.1.5 17325 1pqzA 238 4.68e+00 1g94A 448 4.83e+00 b.71.1.1 65169 c.1.8.1 65170 1phk 298 6.11e+00 1cdkA d.144.1.7 41635 1ew4A 106 6.16e+00 1ew4A d.82.2.1 40023 1trkA 680 6.21e+00 1trkA c.36.1.6 31804 c.36.1.10 31803 c.48.1.1 33090 1qahA 136 7.13e+00 d.79.1.1 -10377 1a5t 334 7.21e+00 1a5t a.80.1.1 18450 c.37.1.20 32423 1l8bA 190 7.28e+00 d.86.1.1 73683 1ej1A 190 7.44e+00 1ejhA d.86.1.1 40144 1ihnA 113 9.31e+00 1ihnA c.103.1.1 62388 1es9A 232 9.38e+00 1wab c.23.10.3 31340 1kutA 230 9.51e+00 d.143.1.1 73017 1jj2I 145 1.01e+01 1ffkG c.21.1.1 63094 1wab 232 1.02e+01 1wab c.23.10.3 31341 1oniA 137 1.03e+01 d.79.1.1 87144 1mvfD 82 1.09e+01 b.129.1.1 85143 1g8pA 350 1.17e+01 1g8pA c.37.1.20 60376 1cs6A 382 1.31e+01 1cs6A b.1.1.4 21760 b.1.1.4 21761 b.1.1.4 21762 b.1.1.4 21763 2tysA 268 1.37e+01 2tysA c.1.2.4 28572 1gpuA 680 1.38e+01 c.36.1.6 65455 c.36.1.10 65454 c.48.1.1 65456 1i3zA 103 1.40e+01 d.93.1.1 83667 1bzyA 217 1.46e+01 1qk3A c.61.1.1 34071 1gpjA 404 1.54e+01 a.151.1.1 65451 c.2.1.7 65452 d.58.39.1 65453 1psdA 409 1.57e+01 1psdA c.2.1.4 30097 c.23.12.1 31357 d.58.18.1 39354 1aqm 453 1.81e+01 1smd b.71.1.1 27717 c.1.8.1 28704 1o0iA 138 1.82e+01 d.38.1.5 86532 1e2fA 215 1.85e+01 3tmkA c.37.1.1 59164 1eulA 994 1.90e+01 1eulA 1jc4A 148 1.93e+01 1jc4A d.32.1.4 62863 1ri5A 298 2.10e+01 unknown_sccs -8063 1mqsA 671 2.16e+01 e.25.1.1 79414 6mhtA 327 2.21e+01 6mhtA c.66.1.26 34226 1e3aB 560 2.32e+01 1ajqB 1ogsA 497 2.34e+01 b.71.1.2 86997 c.1.8.3 86998 1s6cA 183 2.37e+01 a.39.1.5 -858 1lldA 319 2.39e+01 3ldh c.2.1.5 30177 d.162.1.1 42144 1uspA 139 2.46e+01 d.227.1.1 -11179 1ahsA 126 2.52e+01 1ahsA b.19.1.1 23794 1f3lA 321 2.58e+01 1g6q2 c.66.1.6 59630 1pkp 150 2.70e+01 1pkp d.14.1.1 37551 d.50.1.2 38787 1sx5A 244 2.72e+01 c.52.1.2 -7551 1k8kC 372 2.86e+01 b.69.4.1 68308 1kk1A 410 2.96e+01 b.43.3.1 72634 b.44.1.1 72635 c.37.1.8 72636 1c44A 123 2.98e+01 1qndA d.106.1.1 40795 1f7cA 231 2.99e+01 1f7cA a.116.1.1 19107 1fnnA 389 3.01e+01 1fnnA a.4.5.11 16129 c.37.1.20 32426 1f1xA 322 3.03e+01 d.32.1.3 83208 d.32.1.3 83209 5ukdA 194 3.12e+01 1zin c.37.1.1 31851 1hd7A 318 3.13e+01 1bix d.151.1.1 41780 1k0eA 453 3.14e+01 d.161.1.1 67938 1qopA 268 3.14e+01 2tysA c.1.2.4 28570 1d1gA 168 3.23e+01 1d1gA c.71.1.1 34889 1nn5A 215 3.23e+01 c.37.1.1 85892 1qf9A 194 3.23e+01 1zin c.37.1.1 31848 1c1yB 77 3.26e+01 1c1yB d.15.1.5 37618 1onjA 61 3.33e+01 g.7.1.1 -12530 1ukcA 522 3.35e+01 1cby 259 3.39e+01 1cby d.103.1.1 40705 1oapA 109 3.44e+01 unknown_sccs -10428 1pda 315 3.51e+01 1pda c.94.1.1 35751 d.50.2.1 38794 1e2gA 215 3.51e+01 3tmkA c.37.1.1 59165 1vh5A 148 3.51e+01 d.38.1.5 -9677 1bj7 156 3.57e+01 1bj7 b.60.1.1 27113 1jj2Q 154 3.63e+01 1ffkO d.55.1.1 63102 1kg0C 136 3.63e+01 d.169.1.1 72445 1b7dA 61 3.70e+01 1aho g.3.7.1 44139 1eonA 245 3.73e+01 1rvaA c.52.1.2 33238 1ev7A 317 3.75e+01 1ev7B c.52.1.9 33315 1gk9B 557 3.82e+01 1fp1D 372 3.84e+01 1fpqA a.4.5.29 59939 c.66.1.12 59940