CreatePredAlphaCost pred_alpha2k alpha11 T0272.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0272.t04.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 3 near_backbone 3 way_back 3 dry5 5 dry6.5 6 dry8 5 dry12 2 \
	phobic_fit 2 \
	sidechain 6 \
	bystroff 5 \
	soft_clashes 10  backbone_clashes 2 \
	break 20  \
	pred_alpha2k 3 \
	pred_alpha04 3 \
	constraints 10 \
	hbond_geom 1 \
	hbond_geom_backbone 1 \
	hbond_geom_beta 5 \
	hbond_geom_beta_pair 10

// Add the following for extra-cellular proteins:
#	known_ssbond 0.5	# and put ssbond command in constraints file
#	maybe_ssbond 0.5

// For comparative modeling, increase weight of break and hbond_geom...

// put any constraints here, such as helix constraints, strand constraints,
//	sheet constraints, ssbonds, hbonds, or just arbitrary pairs of atoms.

#from T0272.t2k.dssp-ehl2.constraints
HelixConstraint 	A15	D18	0.7007
HelixConstraint 	P22	A32	0.6534
HelixConstraint 	P119	E132	0.7646
HelixConstraint 	D151	L154	0.6004
HelixConstraint 	P185	R193	0.8437

StrandConstraint	L3	V7	0.689
StrandConstraint	L45	R47	0.7465
StrandConstraint	V58	Q62	0.8361
StrandConstraint	Q78	V79	0.6982
StrandConstraint	R94	A101	0.7432
StrandConstraint	L168	V182	0.7284

# from T0272.t04.dssp-ehl2.constraints
HelixConstraint 	S12	D18	0.6372
HelixConstraint 	P22	V33	0.6279
HelixConstraint 	E121	R129	0.6312
HelixConstraint 	W145	Q147	0.6048
HelixConstraint 	T152	F153	0.6268
HelixConstraint 	P185	R193	0.8923

StrandConstraint	W2	V7	0.7252
StrandConstraint	L44	R47	0.7005
StrandConstraint	V58	Q62	0.8486
StrandConstraint	R94	A101	0.7096
StrandConstraint	K105	L107	0.63
StrandConstraint	R113	A115	0.662
StrandConstraint	L168	F176	0.8143
StrandConstraint	R179	V182	0.7871
StrandConstraint	L206	S208	0.6499

# file generated by validate2rr
# based on 280 inputs
# using the NN280-240n300.net.28 network
# limited to score of .30 or greater.
# The score is an approximation of the probability
Constraint L29.CB L95.CB -10. 7.0 14.0 0.517 
Constraint V59.CB L99.CB -10. 7.0 14.0 0.361 
Constraint V182.CB L206.CB -10. 7.0 14.0 0.329 bonus
Constraint L99.CB L192.CB -10. 7.0 14.0 0.3 bonus