Best Alignments for T0272

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1svy/T0272-1svy-t2k-global-str2+CB_burial_14_7-2.2+1.8-adpstyle5.a2m 5.0346e+013.9363e-02 1svy d.109.1.1
1svy/T0272-1svy-t2k-local-str2+CB_burial_14_7-2.2+1.8-adpstyle5.a2m 5.0346e+012.8870e-01 1svy d.109.1.1
1svy/T0272-1svy-t2k-global-str2-1.5-adpstyle5.a2m 5.0346e+013.2466e-01 1svy d.109.1.1
1svy/T0272-1svy-t04-global-str2+CB_burial_14_7-2.2+1.8-adpstyle5.a2m 5.0346e+016.5269e-01 1svy d.109.1.1
1mnp/1arv-T0272-fssp-global-adpstyle5.a2m 2.5276e+012.4150e+00 1arv a.93.1.1
1mn2/1arv-T0272-fssp-global-adpstyle5.a2m 3.0751e+012.8437e+00 1arv a.93.1.1
1svy/T0272-1svy-t2k-global-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 5.0346e+013.9532e+00 1svy d.109.1.1
1svy/T0272-1svy-t2k-local-str2-1.5-adpstyle5.a2m 5.0346e+014.2647e+00 1svy d.109.1.1
1svy/T0272-1svy-t04-global-str2-1.5-adpstyle5.a2m 5.0346e+016.9619e+00 1svy d.109.1.1
1mnp/1arv-T0272-fssp-local-adpstyle5.a2m 2.5276e+018.2153e+00 1arv a.93.1.1
1mn2/1arv-T0272-fssp-local-adpstyle5.a2m 3.0751e+019.6735e+00 1arv a.93.1.1
1gpzA/T0272-1gpzA-t2k-global-adpstyle5.a2m 4.4877e+019.8606e+00 b.47.1.2
g.18.1.1
1gpzA/T0272-1gpzA-t2k-global-adpstyle1.a2m 4.4877e+019.8606e+00 b.47.1.2
g.18.1.1
1ey1A/1eyvA-T0272-fssp-local-adpstyle5.a2m 4.6620e+011.1765e+01 1eyvA a.79.1.1
1llc/1hyhA-T0272-fssp-local-adpstyle5.a2m 3.4611e+011.1790e+01 1hyhA d.162.1.1
c.2.1.5
1svy/T0272-1svy-t04-local-str2+CB_burial_14_7-2.2+1.8-adpstyle5.a2m 5.0346e+011.1911e+01 1svy d.109.1.1
1llc/1hyhA-T0272-fssp-global-adpstyle5.a2m 3.4611e+011.2083e+01 1hyhA d.162.1.1
c.2.1.5
1svy/T0272-1svy-t04-global-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 5.0346e+011.2201e+01 1svy d.109.1.1
1mnp/T0272-1mnp-t04-local-adpstyle5.a2m 2.5276e+011.2278e+01 1arv a.93.1.1
1mnp/T0272-1mnp-t04-local-adpstyle1.a2m 2.5276e+011.2278e+01 1arv a.93.1.1
1svy/1svy-T0272-fssp-global-adpstyle5.a2m 5.0346e+011.2501e+01 1svy d.109.1.1
1svy/1svy-T0272-fssp-local-adpstyle5.a2m 5.0346e+011.2864e+01 1svy d.109.1.1
1gpzA/T0272-1gpzA-t04-global-adpstyle5.a2m 4.4877e+011.4336e+01 b.47.1.2
g.18.1.1
1gpzA/T0272-1gpzA-t04-global-adpstyle1.a2m 4.4877e+011.4336e+01 b.47.1.2
g.18.1.1
1mn2/T0272-1mn2-t04-local-adpstyle5.a2m 3.0751e+011.4993e+01 1arv a.93.1.1
1mn2/T0272-1mn2-t04-local-adpstyle1.a2m 3.0751e+011.4993e+01 1arv a.93.1.1
1md7A/T0272-1md7A-t2k-global-adpstyle1.a2m 4.1546e+011.5166e+01 b.47.1.2
g.18.1.1
1md7A/T0272-1md7A-t2k-global-adpstyle5.a2m 4.1546e+011.5166e+01 b.47.1.2
g.18.1.1
1svy/T0272-1svy-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 5.0346e+011.5296e+01 1svy d.109.1.1
1ey1A/1eyvA-T0272-fssp-global-adpstyle5.a2m 4.6620e+011.5462e+01 1eyvA a.79.1.1
1md7A/T0272-1md7A-t04-global-adpstyle5.a2m 4.1546e+011.5869e+01 b.47.1.2
g.18.1.1
1md7A/T0272-1md7A-t04-global-adpstyle1.a2m 4.1546e+011.5869e+01 b.47.1.2
g.18.1.1
1md8A/T0272-1md8A-t04-global-adpstyle1.a2m 4.0229e+011.6360e+01 b.47.1.2
g.18.1.1
1md8A/T0272-1md8A-t2k-global-adpstyle1.a2m 4.0229e+011.6360e+01 b.47.1.2
g.18.1.1
1md8A/T0272-1md8A-t04-global-adpstyle5.a2m 4.0229e+011.6360e+01 b.47.1.2
g.18.1.1
1md8A/T0272-1md8A-t2k-global-adpstyle5.a2m 4.0229e+011.6360e+01 b.47.1.2
g.18.1.1
1mnp/T0272-1mnp-t2k-local-adpstyle1.a2m 2.5276e+011.7411e+01 1arv a.93.1.1
1mnp/T0272-1mnp-t2k-local-adpstyle5.a2m 2.5276e+011.7411e+01 1arv a.93.1.1
1mn2/T0272-1mn2-t2k-local-adpstyle5.a2m 3.0751e+012.2103e+01 1arv a.93.1.1
1mn2/T0272-1mn2-t2k-local-adpstyle1.a2m 3.0751e+012.2103e+01 1arv a.93.1.1
1llc/T0272-1llc-t2k-local-adpstyle5.a2m 3.4611e+012.5519e+01 1hyhA d.162.1.1
c.2.1.5
1llc/T0272-1llc-t2k-local-adpstyle1.a2m 3.4611e+012.5519e+01 1hyhA d.162.1.1
c.2.1.5
1llc/T0272-1llc-t04-local-adpstyle5.a2m 3.4611e+012.8763e+01 1hyhA d.162.1.1
c.2.1.5
1llc/T0272-1llc-t04-local-adpstyle1.a2m 3.4611e+012.8763e+01 1hyhA d.162.1.1
c.2.1.5
1ssmA/T0272-1ssmA-t2k-global-adpstyle1.a2m 5.0724e+012.9834e+01
1ssmA/T0272-1ssmA-t2k-global-adpstyle5.a2m 5.0724e+012.9834e+01
1md8A/T0272-1md8A-t2k-local-adpstyle5.a2m 4.0229e+013.0573e+01 b.47.1.2
g.18.1.1
1md8A/T0272-1md8A-t2k-local-adpstyle1.a2m 4.0229e+013.0573e+01 b.47.1.2
g.18.1.1
1sstA/T0272-1sstA-t2k-global-adpstyle5.a2m 4.7845e+013.0762e+01
1sstA/T0272-1sstA-t2k-global-adpstyle1.a2m 4.7845e+013.0762e+01
1ssmA/T0272-1ssmA-t04-global-adpstyle5.a2m 5.0724e+013.1318e+01
1ssmA/T0272-1ssmA-t04-global-adpstyle1.a2m 5.0724e+013.1318e+01
1md7A/T0272-1md7A-t2k-local-adpstyle5.a2m 4.1546e+013.1797e+01 b.47.1.2
g.18.1.1
1md7A/T0272-1md7A-t2k-local-adpstyle1.a2m 4.1546e+013.1797e+01 b.47.1.2
g.18.1.1
1ey1A/T0272-1ey1A-t2k-global-adpstyle1.a2m 4.6620e+013.2016e+01 1eyvA a.79.1.1
1ey1A/T0272-1ey1A-t2k-global-adpstyle5.a2m 4.6620e+013.2016e+01 1eyvA a.79.1.1
1llc/T0272-1llc-t2k-global-adpstyle1.a2m 3.4611e+013.3682e+01 1hyhA d.162.1.1
c.2.1.5
1llc/T0272-1llc-t2k-global-adpstyle5.a2m 3.4611e+013.3682e+01 1hyhA d.162.1.1
c.2.1.5
1mnp/T0272-1mnp-t04-global-adpstyle5.a2m 2.5276e+013.4159e+01 1arv a.93.1.1
1mnp/T0272-1mnp-t04-global-adpstyle1.a2m 2.5276e+013.4159e+01 1arv a.93.1.1
1gpzA/T0272-1gpzA-t2k-local-adpstyle1.a2m 4.4877e+013.4942e+01 b.47.1.2
g.18.1.1
1gpzA/T0272-1gpzA-t2k-local-adpstyle5.a2m 4.4877e+013.4942e+01 b.47.1.2
g.18.1.1
1svy/T0272-1svy-t04-local-str2-1.5-adpstyle5.a2m 5.0346e+013.5644e+01 1svy d.109.1.1
1ey1A/T0272-1ey1A-t2k-local-adpstyle5.a2m 4.6620e+013.6535e+01 1eyvA a.79.1.1
1ey1A/T0272-1ey1A-t2k-local-adpstyle1.a2m 4.6620e+013.6535e+01 1eyvA a.79.1.1
1sstA/T0272-1sstA-t2k-local-adpstyle5.a2m 4.7845e+013.7672e+01
1sstA/T0272-1sstA-t2k-local-adpstyle1.a2m 4.7845e+013.7672e+01
1mnp/T0272-1mnp-t2k-global-adpstyle5.a2m 2.5276e+013.8747e+01 1arv a.93.1.1
1mnp/T0272-1mnp-t2k-global-adpstyle1.a2m 2.5276e+013.8747e+01 1arv a.93.1.1
1mn2/T0272-1mn2-t04-global-adpstyle1.a2m 3.0751e+014.0179e+01 1arv a.93.1.1
1mn2/T0272-1mn2-t04-global-adpstyle5.a2m 3.0751e+014.0179e+01 1arv a.93.1.1
1ssmA/T0272-1ssmA-t2k-local-adpstyle1.a2m 5.0724e+014.0427e+01
1ssmA/T0272-1ssmA-t2k-local-adpstyle5.a2m 5.0724e+014.0427e+01
1ey1A/T0272-1ey1A-t04-local-adpstyle1.a2m 4.6620e+014.4055e+01 1eyvA a.79.1.1
1ey1A/T0272-1ey1A-t04-local-adpstyle5.a2m 4.6620e+014.4055e+01 1eyvA a.79.1.1
1mn2/T0272-1mn2-t2k-global-adpstyle1.a2m 3.0751e+014.6529e+01 1arv a.93.1.1
1mn2/T0272-1mn2-t2k-global-adpstyle5.a2m 3.0751e+014.6529e+01 1arv a.93.1.1
1mnp/T0272-1mnp-simplesw-adpstyle5.a2m 2.5276e+014.7039e+01 1arv a.93.1.1
1mnp/T0272-1mnp-simplesw-adpstyle1.a2m 2.5276e+014.7039e+01 1arv a.93.1.1
1md8A/T0272-1md8A-t04-local-adpstyle5.a2m 4.0229e+014.8596e+01 b.47.1.2
g.18.1.1
1md8A/T0272-1md8A-t04-local-adpstyle1.a2m 4.0229e+014.8596e+01 b.47.1.2
g.18.1.1
1llc/T0272-1llc-t04-global-adpstyle5.a2m 3.4611e+014.9411e+01 1hyhA d.162.1.1
c.2.1.5
1llc/T0272-1llc-t04-global-adpstyle1.a2m 3.4611e+014.9411e+01 1hyhA d.162.1.1
c.2.1.5
1md7A/T0272-1md7A-t04-local-adpstyle5.a2m 4.1546e+015.0374e+01 b.47.1.2
g.18.1.1
1md7A/T0272-1md7A-t04-local-adpstyle1.a2m 4.1546e+015.0374e+01 b.47.1.2
g.18.1.1
1gpzA/T0272-1gpzA-t04-local-adpstyle1.a2m 4.4877e+015.4439e+01 b.47.1.2
g.18.1.1
1gpzA/T0272-1gpzA-t04-local-adpstyle5.a2m 4.4877e+015.4439e+01 b.47.1.2
g.18.1.1
1mn2/T0272-1mn2-simplesw-adpstyle1.a2m 3.0751e+015.5300e+01 1arv a.93.1.1
1mn2/T0272-1mn2-simplesw-adpstyle5.a2m 3.0751e+015.5300e+01 1arv a.93.1.1
1ey1A/T0272-1ey1A-t04-global-adpstyle5.a2m 4.6620e+015.8817e+01 1eyvA a.79.1.1
1ey1A/T0272-1ey1A-t04-global-adpstyle1.a2m 4.6620e+015.8817e+01 1eyvA a.79.1.1
1sstA/T0272-1sstA-t04-global-adpstyle1.a2m 4.7845e+015.9445e+01
1sstA/T0272-1sstA-t04-global-adpstyle5.a2m 4.7845e+015.9445e+01
1mnp/1mnp-T0272-t2k-local-adpstyle1.a2m 2.5276e+016.5804e+01 1arv a.93.1.1
1mnp/1mnp-T0272-t2k-local-adpstyle5.a2m 2.5276e+016.5804e+01 1arv a.93.1.1
1llc/T0272-1llc-simplesw-adpstyle1.a2m 3.4611e+016.6364e+01 1hyhA d.162.1.1
c.2.1.5
1llc/T0272-1llc-simplesw-adpstyle5.a2m 3.4611e+016.6364e+01 1hyhA d.162.1.1
c.2.1.5
1svy/T0272-1svy-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 5.0346e+016.7901e+01 1svy d.109.1.1
1mnp/1mnp-T0272-t2k-global-adpstyle5.a2m 2.5276e+016.8711e+01 1arv a.93.1.1
1mnp/1mnp-T0272-t2k-global-adpstyle1.a2m 2.5276e+016.8711e+01 1arv a.93.1.1
1sstA/T0272-1sstA-t04-local-adpstyle1.a2m 4.7845e+017.0240e+01
1sstA/T0272-1sstA-t04-local-adpstyle5.a2m 4.7845e+017.0240e+01
1svy/T0272-1svy-t2k-global-adpstyle5.a2m 5.0346e+017.1642e+01 1svy d.109.1.1
1svy/T0272-1svy-t2k-global-adpstyle1.a2m 5.0346e+017.1642e+01 1svy d.109.1.1
1ssmA/T0272-1ssmA-t04-local-adpstyle5.a2m 5.0724e+017.3276e+01
1ssmA/T0272-1ssmA-t04-local-adpstyle1.a2m 5.0724e+017.3276e+01
1svy/T0272-1svy-t04-global-adpstyle1.a2m 5.0346e+017.8583e+01 1svy d.109.1.1
1svy/T0272-1svy-t04-global-adpstyle5.a2m 5.0346e+017.8583e+01 1svy d.109.1.1
1sstA/T0272-1sstA-simplesw-adpstyle5.a2m 4.7845e+018.6407e+01
1sstA/T0272-1sstA-simplesw-adpstyle1.a2m 4.7845e+018.6407e+01
1ssmA/T0272-1ssmA-simplesw-adpstyle5.a2m 5.0724e+019.0257e+01
1ssmA/T0272-1ssmA-simplesw-adpstyle1.a2m 5.0724e+019.0257e+01
1md8A/T0272-1md8A-simplesw-adpstyle5.a2m 4.0229e+019.4432e+01 b.47.1.2
g.18.1.1
1md8A/T0272-1md8A-simplesw-adpstyle1.a2m 4.0229e+019.4432e+01 b.47.1.2
g.18.1.1
1md7A/T0272-1md7A-simplesw-adpstyle5.a2m 4.1546e+019.7073e+01 b.47.1.2
g.18.1.1
1md7A/T0272-1md7A-simplesw-adpstyle1.a2m 4.1546e+019.7073e+01 b.47.1.2
g.18.1.1
1svy/1svy-T0272-t2k-local-adpstyle1.a2m 5.0346e+019.7768e+01 1svy d.109.1.1
1svy/1svy-T0272-t2k-local-adpstyle5.a2m 5.0346e+019.7768e+01 1svy d.109.1.1
1svy/T0272-1svy-t2k-local-adpstyle1.a2m 5.0346e+019.8127e+01 1svy d.109.1.1
1svy/T0272-1svy-t2k-local-adpstyle5.a2m 5.0346e+019.8127e+01 1svy d.109.1.1
1svy/1svy-T0272-t04-local-adpstyle5.a2m 5.0346e+019.9775e+01 1svy d.109.1.1
1svy/1svy-T0272-t04-local-adpstyle1.a2m 5.0346e+019.9775e+01 1svy d.109.1.1
1ey1A/T0272-1ey1A-simplesw-adpstyle5.a2m 4.6620e+011.0318e+02 1eyvA a.79.1.1
1ey1A/T0272-1ey1A-simplesw-adpstyle1.a2m 4.6620e+011.0318e+02 1eyvA a.79.1.1
1gpzA/T0272-1gpzA-simplesw-adpstyle5.a2m 4.4877e+011.0375e+02 b.47.1.2
g.18.1.1
1gpzA/T0272-1gpzA-simplesw-adpstyle1.a2m 4.4877e+011.0375e+02 b.47.1.2
g.18.1.1
1svy/T0272-1svy-t04-local-adpstyle1.a2m 5.0346e+011.0399e+02 1svy d.109.1.1
1svy/T0272-1svy-t04-local-adpstyle5.a2m 5.0346e+011.0399e+02 1svy d.109.1.1
1svy/T0272-1svy-simplesw-adpstyle5.a2m 5.0346e+011.0696e+02 1svy d.109.1.1
1svy/T0272-1svy-simplesw-adpstyle1.a2m 5.0346e+011.0696e+02 1svy d.109.1.1
1svy/1svy-T0272-t04-global-adpstyle5.a2m 5.0346e+011.1864e+02 1svy d.109.1.1
1svy/1svy-T0272-t04-global-adpstyle1.a2m 5.0346e+011.1864e+02 1svy d.109.1.1
1svy/1svy-T0272-t2k-global-adpstyle5.a2m 5.0346e+011.2161e+02 1svy d.109.1.1
1svy/1svy-T0272-t2k-global-adpstyle1.a2m 5.0346e+011.2161e+02 1svy d.109.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001