# List of top-scoring protein chains for T0272.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1od5A 492 4.12e+00 b.82.1.2 86832 b.82.1.2 86833 1mnp 357 5.03e+00 1arv a.93.1.1 18668 1p9oA 313 6.41e+00 unknown_sccs -8423 1mn1 357 6.66e+00 1arv a.93.1.1 18667 1mn2 357 6.75e+00 1arv a.93.1.1 18666 1llc 325 8.06e+00 1hyhA c.2.1.5 30176 d.162.1.1 42143 1md8A 329 1.01e+01 b.47.1.2 -4233 g.18.1.1 -12674 1md7A 328 1.06e+01 b.47.1.2 -4234 g.18.1.1 -12675 1gpzA 399 1.19e+01 b.47.1.2 70302 g.18.1.1 70303 g.18.1.1 70304 1ey1A 139 1.26e+01 1eyvA a.79.1.1 18449 1sstA 267 1.31e+01 1ssqA 267 1.31e+01 1ssmA 242 1.43e+01 1ofcX 304 1.67e+01 a.4.1.3 -195 unknown_sccs -199 unknown_sccs -978 1nf1A 333 1.69e+01 1nf1A a.116.1.2 19110 1uip 349 2.33e+01 1a4mA c.1.9.1 29022 1rwhA 757 2.42e+01 a.102.3.2 -1340 b.24.1.1 -3300 b.30.5.2 -3508 1rw9A 757 2.42e+01 a.102.3.2 -1335 b.24.1.1 -3295 b.30.5.2 -3503 1kczA 413 2.52e+01 c.1.11.2 68451 d.54.1.1 68452 1fkw 349 2.57e+01 1a4mA c.1.9.1 29019 1a4mA 349 2.63e+01 1a4mA c.1.9.1 29014 1k42A 168 2.66e+01 b.18.1.14 72032 2ada 352 2.66e+01 1a4mA c.1.9.1 29027 2hmiC 214 2.66e+01 8fabA b.1.1.1 20274 b.1.1.2 21274 1rhcA 330 2.72e+01 c.1.16.3 -5606 1nd7A 374 2.72e+01 d.148.1.1 -11394 1hysC 214 2.76e+01 32c2A b.1.1.1 61420 b.1.1.2 61421 1h41A 708 2.85e+01 c.1.8.10 83472 d.92.2.2 83473 1quf 304 2.89e+01 1fnc b.43.4.2 25650 c.25.1.1 31540 1fzkA 274 2.89e+01 1agdA b.1.1.2 60149 d.19.1.1 60150 1jetA 517 2.90e+01 1jevA c.94.1.1 35718 1b8gA 429 2.99e+01 1b8gA c.67.1.4 34499 1ggcL 215 3.10e+01 8fabA b.1.1.1 19880 b.1.1.2 20976 1ggiL 218 3.11e+01 8fabA b.1.1.1 19876 b.1.1.2 20972 1l4iA 206 3.11e+01 b.1.11.1 73564 b.7.2.1 73565 1gqiA 708 3.19e+01 c.1.8.10 76279 d.92.2.2 76280 1ogiA 303 3.20e+01 b.43.4.2 -4042 c.25.1.1 -6587 1h85A 295 3.21e+01 b.43.4.2 65716 c.25.1.1 65717 2mhaA 270 3.26e+01 1agdA b.1.1.2 20803 d.19.1.1 38291 1fo0H 276 3.27e+01 1agdA b.1.1.2 20797 d.19.1.1 38288 1uw5A 270 3.28e+01 d.129.3.4 -11041 1kj3H 279 3.29e+01 b.1.1.2 72569 d.19.1.1 72570 1lk2A 274 3.29e+01 b.1.1.2 -2610 d.19.1.1 -9365 1namH 275 3.30e+01 b.1.1.2 85490 d.19.1.1 85491 1n59A 276 3.30e+01 b.1.1.2 80008 d.19.1.1 80009 1gr1A 303 3.31e+01 b.43.4.2 76319 c.25.1.1 76320 1kj2H 277 3.31e+01 b.1.1.2 72563 d.19.1.1 72564 1nanH 278 3.31e+01 b.1.1.2 85493 d.19.1.1 85494 1qgzA 295 3.36e+01 b.43.4.2 68889 c.25.1.1 68890 1qh0A 295 3.40e+01 b.43.4.2 68891 c.25.1.1 68892 1bjk 295 3.44e+01 1fnc b.43.4.2 25649 c.25.1.1 31539 1e63A 304 3.46e+01 1fnc b.43.4.2 59287 c.25.1.1 59288 1bqeA 295 3.47e+01 b.43.4.2 64760 c.25.1.1 64761 1m7yA 435 3.48e+01 c.67.1.4 78761 1fzoA 274 3.50e+01 1agdA b.1.1.2 60155 d.19.1.1 60156 1qgyA 295 3.51e+01 b.43.4.2 -4044 c.25.1.1 -6589 1b2rA 304 3.53e+01 1fnc b.43.4.2 25648 c.25.1.1 31538 1e64A 304 3.53e+01 1fnc b.43.4.2 59289 c.25.1.1 59290 1uijA 416 3.54e+01 1que 303 3.54e+01 1fnc b.43.4.2 25647 c.25.1.1 31537 1s7qA 348 3.54e+01 b.1.1.2 -2613 d.19.1.1 -9368 1gjrA 304 3.54e+01 b.43.4.2 70197 c.25.1.1 70198 1e62A 304 3.58e+01 1fnc b.43.4.2 59285 c.25.1.1 59286 1go2A 304 3.60e+01 b.43.4.2 76243 c.25.1.1 76244 1h42A 304 3.63e+01 b.43.4.2 -4041 c.25.1.1 -6586 1ewyA 303 3.83e+01 1fnc b.43.4.2 25651 c.25.1.1 31541 1fkx 349 3.86e+01 1a4mA c.1.9.1 29018 1uio 349 3.86e+01 1a4mA c.1.9.1 29021 1igtA 214 3.95e+01 8fabA b.1.1.1 19764 b.1.1.2 20866 1kcmA 270 3.96e+01 d.129.3.4 72300