# List of top-scoring protein chains for t2k-100-30-near-backbone-11 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1od5A 492 1.14e+00 b.82.1.2 86832 b.82.1.2 86833 1tif 78 2.15e+00 1tif d.15.8.1 37836 1ofcX 304 2.37e+00 a.4.1.3 -195 unknown_sccs -199 unknown_sccs -978 1roaA 122 3.20e+00 1bquA 215 3.80e+00 1bquA b.1.2.1 22066 b.1.2.1 22067 1k42A 168 3.95e+00 b.18.1.14 72032 1kq6A 141 5.95e+00 d.189.1.1 -9926 8ohm 435 7.47e+00 1heiA c.37.1.14 32469 c.37.1.14 32470 2hft 218 7.67e+00 1boy b.1.2.1 21951 b.1.2.1 21952 1boy 219 7.90e+00 1boy b.1.2.1 21955 b.1.2.1 21956 1o7kA 131 8.72e+00 d.189.1.1 81144 1g41A 444 9.06e+00 1do0A c.37.1.20 32450 1i05A 180 1.05e+01 1mup b.60.1.1 27130 1danU 121 1.08e+01 1boy b.1.2.1 21954 1mup 166 1.10e+01 1mup b.60.1.1 27133 1ru8A 232 1.12e+01 c.26.2.1 -6635 1bj8 109 1.19e+01 1bquA b.1.2.1 22070 1i06A 180 1.23e+01 1mup b.60.1.1 27131 1qy1A 174 1.35e+01 b.60.1.1 -4445 1cs1A 386 1.61e+01 1ibjA c.67.1.3 34399 1oh0A 131 1.73e+01 d.17.4.3 87004 1dvfD 120 1.75e+01 1mfa b.1.1.1 20107 1rcwA 231 1.77e+01 unknown_sccs -1921 1df3A 162 1.86e+01 1mup b.60.1.1 27134 1toh 343 1.98e+01 4pah d.178.1.1 42573 1k8wA 327 2.00e+01 b.122.1.1 83094 unknown_sccs -10143 1d2qA 173 2.12e+01 1d4vB b.22.1.1 23894 1dg6A 191 2.24e+01 1d4vB b.22.1.1 23883 1o77C 146 2.25e+01 c.23.2.1 81127 2shpA 525 2.32e+01 2shpA c.45.1.2 32683 d.93.1.1 40533 d.93.1.1 40534 1eiwA 111 2.41e+01 1eiwA c.23.3.1 31130 1bp3B 211 2.63e+01 1axiB b.1.2.1 22031 b.1.2.1 22032 1tvdA 116 2.64e+01 1tvdA b.1.1.1 20650 1jv4A 162 2.65e+01 b.60.1.1 67343 1pmy 123 2.69e+01 1bqk b.6.1.1 22888 1iqpA 327 2.75e+01 a.80.1.1 62649 c.37.1.20 62650 1heiA 451 2.78e+01 1heiA c.37.1.14 32463 c.37.1.14 32464 1eerB 227 2.83e+01 1eerB b.1.2.1 22011 b.1.2.1 22012 1h2kA 349 2.83e+01 b.82.2.6 76572 1im2A 444 2.89e+01 1do0A c.37.1.20 62564 1jj2H 167 2.92e+01 1ffkF d.41.4.1 63093 1k0wA 231 3.10e+01 c.74.1.1 77220 1skoA 143 3.15e+01 1gd5A 130 3.16e+01 1gd5A d.189.1.1 60439 1cs1C 386 3.23e+01 1ibjA c.67.1.3 34401 1fzkA 274 3.28e+01 1agdA b.1.1.2 60149 d.19.1.1 60150 1csp 67 3.29e+01 1mjc b.40.4.5 25321 1vddA 228 3.48e+01 1nfiA 301 3.48e+01 1a3qA b.1.18.1 21942 b.2.5.3 22455 1d4vB 163 3.55e+01 1d4vB b.22.1.1 23884 1hph 37 3.59e+01 1hph j.15.1.1 46159 1ebpA 211 3.64e+01 1eerB b.1.2.1 22023 b.1.2.1 22024 1n1cA 217 3.80e+01 a.184.1.1 85254 1wejH 223 3.81e+01 1igtB b.1.1.1 20361 b.1.1.2 21353 1mzeA 351 3.87e+01 b.82.2.6 79694 1aw0 72 3.91e+01 1aw0 d.58.17.1 39342 1nfiC 301 3.92e+01 b.1.18.1 21943 b.2.5.3 22456 2cbp 96 3.93e+01 2cbp b.6.1.1 22895 1fzoA 274 3.93e+01 1agdA b.1.1.2 60155 d.19.1.1 60156 1i50C 318 3.97e+01 d.74.3.1 61756 d.181.1.1 61757 1e4fT 419 3.99e+01 1e4fT c.55.1.1 33453 c.55.1.1 33454