# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1svq 114 3.65e+00 1svy d.109.1.1 40832 1svr 114 7.01e+00 1svy d.109.1.1 40833 8ohm 435 8.65e+00 1heiA c.37.1.14 32469 c.37.1.14 32470 1quqB 121 9.19e+00 1quqB b.40.4.3 25305 1bxrA 1073 9.27e+00 a.92.1.1 18570 c.24.1.1 31499 c.30.1.1 31697 c.30.1.1 31698 d.142.1.2 41542 d.142.1.2 41543 1cs1C 386 1.00e+01 1ibjA c.67.1.3 34401 1od5A 492 1.03e+01 b.82.1.2 86832 b.82.1.2 86833 1keeA 1073 1.07e+01 a.92.1.1 68492 c.24.1.1 68493 c.30.1.1 68494 c.30.1.1 68495 d.142.1.2 68496 d.142.1.2 68497 1uwwA 191 1.25e+01 1m1lA 236 1.27e+01 unknown_sccs -11674 1k42A 168 1.31e+01 b.18.1.14 72032 1hdkA 141 1.31e+01 b.29.1.3 65807 1g86A 142 1.32e+01 b.29.1.3 70161 1lcl 142 1.32e+01 1lcl b.29.1.3 24216 1m1cA 680 1.39e+01 e.42.1.1 78395 1svy 114 1.42e+01 1svy d.109.1.1 40831 1mdoA 393 1.46e+01 c.67.1.4 79013 1c3oA 1073 1.49e+01 1c3oA a.92.1.1 18562 c.24.1.1 31491 c.30.1.1 31681 c.30.1.1 31682 d.142.1.2 41526 d.142.1.2 41527 1f15A 218 1.65e+01 1f15B b.121.4.5 23320 1cs0C 1073 1.77e+01 a.92.1.1 18559 c.24.1.1 31488 c.30.1.1 31675 c.30.1.1 31676 d.142.1.2 41520 d.142.1.2 41521 1keeC 1073 1.97e+01 a.92.1.1 68500 c.24.1.1 68501 c.30.1.1 68502 c.30.1.1 68503 d.142.1.2 68504 d.142.1.2 68505 1neu 124 1.98e+01 1neu b.1.1.1 19704 1s72X 92 2.03e+01 1jj2W 91 2.05e+01 1ffkU d.29.1.1 63108 1heiA 451 2.16e+01 1heiA c.37.1.14 32463 c.37.1.14 32464 1v7zA 260 2.22e+01 unknown_sccs -6353 1e0tA 470 2.42e+01 1a49A b.58.1.1 27064 c.1.12.1 29292 c.49.1.1 33146 1a9xA 1058 2.45e+01 a.92.1.1 18550 c.24.1.1 31479 c.30.1.1 31657 c.30.1.1 31658 d.142.1.2 41502 d.142.1.2 41503 1ky3A 182 2.49e+01 c.37.1.8 73193 1g41A 444 2.72e+01 1do0A c.37.1.20 32450 1jeyA 609 2.74e+01 1jeqA unknown_sccs -4426 unknown_sccs -7990 1fjjA 159 2.93e+01 1fjjA b.17.1.2 59852 1dkxA 219 3.08e+01 1dkzA unknown_sccs -446 unknown_sccs -3061 1si7A 369 3.12e+01 unknown_sccs -10163 1bpoA 494 3.31e+01 1bpoA a.118.1.4 19143 b.69.6.1 27670 1c3oE 1073 3.42e+01 a.92.1.1 18564 c.24.1.1 31493 c.30.1.1 31685 c.30.1.1 31686 d.142.1.2 41530 d.142.1.2 41531 1fwcC 567 3.44e+01 1ubpC b.92.1.1 28410 c.1.9.2 29032 1keeG 1073 3.57e+01 a.92.1.1 68516 c.24.1.1 68517 c.30.1.1 68518 c.30.1.1 68519 d.142.1.2 68520 d.142.1.2 68521 1p35A 299 3.70e+01 1p35A b.28.1.1 23925 1szwA 379 3.85e+01 unknown_sccs -10164 1on0A 158 3.92e+01 d.108.1.1 87095 1ncg 110 3.95e+01 1edhA b.1.6.1 22193 1s4bP 674 3.99e+01