# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1l4iA 206 3.31e-01 b.1.11.1 73564 b.7.2.1 73565 1b8aA 438 5.38e-01 1b8aA b.40.4.1 25244 d.104.1.1 40765 1o77B 146 1.42e+00 c.23.2.1 81126 1o77C 146 2.29e+00 c.23.2.1 81127 1ki1B 352 2.41e+00 a.87.1.1 72497 b.55.1.1 72498 1o77E 146 2.48e+00 c.23.2.1 81129 1fyxA 149 2.52e+00 1fyvA c.23.2.1 31128 1nd7A 374 3.51e+00 d.148.1.1 -11394 1o77D 146 3.83e+00 c.23.2.1 81128 1c8zA 265 3.95e+00 1c8zA d.23.1.1 38375 1n5nA 180 3.97e+00 d.167.1.1 85336 1roaA 122 4.36e+00 1tif 78 5.65e+00 1tif d.15.8.1 37836 1agrH 205 5.95e+00 1agrE a.91.1.1 18539 1g8pA 350 8.17e+00 1g8pA c.37.1.20 60376 1fnb 314 8.30e+00 1fnc b.43.4.2 25628 c.25.1.1 31518 1fnc 314 8.36e+00 1fnc b.43.4.2 25627 c.25.1.1 31517 1fnd 314 8.40e+00 1fnc b.43.4.2 25626 c.25.1.1 31516 1f1zA 273 8.68e+00 1f1zA a.4.5.27 16081 c.52.1.16 33334 7ahlA 293 9.92e+00 7ahlA f.6.1.1 43812 1ns5A 155 1.25e+01 c.116.1.3 80705 1f15A 218 1.31e+01 1f15B b.121.4.5 23320 1b9lA 120 1.34e+01 1b9lA d.96.1.3 40665 1nf1A 333 1.40e+01 1nf1A a.116.1.2 19110 2bbvA 363 1.45e+01 2bbvA b.121.4.4 23323 1g86A 142 1.47e+01 b.29.1.3 70161 1f0cA 305 1.47e+01 1c8oA e.1.1.1 42676 1s4qA 228 1.49e+01 c.37.1.1 -6975 1utcA 363 1.54e+01 a.118.1.4 -1568 b.69.6.1 -4612 1c8oA 300 1.64e+01 1c8oA e.1.1.1 42677 1jfkA 134 1.67e+01 a.39.1.5 66639 1avaC 181 1.74e+01 1avaC b.42.4.1 25604 1hdkA 141 1.74e+01 b.29.1.3 65807 1fzkA 274 1.79e+01 1agdA b.1.1.2 60149 d.19.1.1 60150 1lcl 142 1.87e+01 1lcl b.29.1.3 24216 1dyqA 234 1.88e+01 3seb b.40.2.2 59140 d.15.6.1 59141 2bbvC 363 2.02e+01 2bbvA b.121.4.4 23325 1bf8 205 2.29e+01 1qpxA b.1.11.1 22332 b.7.2.1 23214 1av1A 201 2.30e+01 1av1A h.5.1.1 45796 1a3k 137 2.31e+01 1a3k b.29.1.3 24218 1kgsA 225 2.36e+01 a.4.6.1 68596 c.23.1.1 68597 1irxA 523 2.40e+01 a.97.1.2 71378 c.26.1.1 71379 1que 303 2.40e+01 1fnc b.43.4.2 25647 c.25.1.1 31537 1i06A 180 2.45e+01 1mup b.60.1.1 27131 1qh0A 295 2.48e+01 b.43.4.2 68891 c.25.1.1 68892 1h6yA 170 2.58e+01 b.18.1.7 70904 1fzoA 274 2.59e+01 1agdA b.1.1.2 60155 d.19.1.1 60156 1mzeA 351 2.64e+01 b.82.2.6 79694 1th8A 145 2.67e+01 1b2rA 304 2.72e+01 1fnc b.43.4.2 25648 c.25.1.1 31538 1g7pA 274 2.75e+01 b.1.1.2 70153 d.19.1.1 70154 1jc4A 148 2.75e+01 1jc4A d.32.1.4 62863 1vypX 364 2.85e+01 1ntyA 311 2.90e+01 1p9sA 300 2.92e+01 b.47.1.4 87999 1rxwA 336 3.04e+01 a.60.7.1 -1041 c.120.1.2 -6680 1go2A 304 3.08e+01 b.43.4.2 76243 c.25.1.1 76244 1k42A 168 3.20e+01 b.18.1.14 72032 1lk2A 274 3.32e+01 b.1.1.2 -2610 d.19.1.1 -9365 1gvoA 364 3.37e+01 c.1.4.1 76357 1ogiA 303 3.38e+01 b.43.4.2 -4042 c.25.1.1 -6587 1b2pA 119 3.44e+01 1b2pA b.78.1.1 27998 1jv4A 162 3.51e+01 b.60.1.1 67343 1i05A 180 3.74e+01 1mup b.60.1.1 27130 1vyrA 364 3.85e+01 1ijyA 130 3.88e+01 1ijxA a.141.1.1 62517 1cewI 108 3.92e+01 1cewI d.17.1.2 37999