Citations (SAM, SAM-T99, HMMs)
10 20 30
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1 ...M...WLTKLVL...N.....PA..S..R.AAR..R..DL.A....N..P.YE...MHRTLSK
2 ...M...YLSRITL...H.....TSelS..P.AQL..L..HL.Ver..G..E.YV...MHQWLWD
3 ...M...YLSRITL...H.....TGqlS..P.AQL..L..HL.V....DrgE.YV...MHQWLWD
4 ...M...YLSKIVL...R.....QS..S..Q.TAN..IlaKLsA....N..GvYT...SHQLLWK
5 ...M...YLSRIQLrfnN.....LR..P..EmLAK..W..NS.A....R..P.YA...SHQWLWQ
6 ...M...YLTRLTL...D.....PR..S..A.QAR..R..DL.A....D..A.YD...MHRTLVR
7 ...Ms..HITRAELsr.D.....TG..A..R.KAL..T..AL.LrdqgG..T.DG...GHRLVWT
8 ...Msv.WLTRIVP...D.....PR..S..R.DAR..R..DL.G....G..N.DSamgLHRRLMS
9 ...M...YLSKVII...-.....--..A..R.AWS..R..DL.-....-..-.YQ...LHQGLWH
10 ...M...YLSKVLI...N.....--..G..T.ACR..-..--.-....N..P.YE...IHRVLWK
11 ntkI...HLVKLPV...HialsvPA..K..N.KPRkgW..EL.T....D..P.SF...RHRAVMA
12 ...M...WMSKLVL...D.....PR..-..R.AVG..K..NL.-....-..-.YD...THRLLWN
13 ...-...-------...-.....--..-..-.---..-..--.-....-..-.--...MHAAVMS
14 m..M...YISMVAL...-.....--..-..-.---..-..SV.I....D..T.YE...QHQAIWE
15 ...M...IATMLTL...S.....RK..D..V.KAL..R..-I.T....D..S.YS...LHRVIYS
16 ...MtplYLISLPL...D.....MV..SfhR.WAG..Q..RG.I....G..T.DE...G-RALHH
17 ...-...-------...-.....--..-..-.---..-..--.-....-..-.--...-------
18 ...-...-------...-.....--..-..-.---..-..--.-....-..-.--...-------
19 ...-...-------...-.....--..-..-.---..-..--.-....-..-.--...-------
20 ...-...-------...-.....--..-..-.---..-..--.-....-..-.--...-------
21 ...-...-------...-.....--..-..-.---..-..--.-....-..-.--...-------
40 50 60 70
| | | |
1 AVS.R...ALEEGRER.....L..L..WRLE.PARGLEPPVV.....LVQTLTE...PDWSVLD.
2 LFP.-...--GSKERQ.....F..L..YRRE.ELQGAFRFFV.....L--SQEQ...PAASAIF.
3 LFP.-...--GGKERQ.....F..L..YRRE.ELQGAFRFFV.....L--SQER...PAESETF.
4 LFS.T...---DEKRQ.....F..L..FREEiGIMGL--PVF.....YVLSKTS...PQ---TE.
5 LFP.-...--EQELRQ.....F..L..FREE.AHGG----FF.....ML-SAIP...P---LLQ.
6 AFV.R...DERDAPGR.....F..L..WRLEpGADAWASPTL.....LVQSCES...GDWDVLQg
7 LFA.D...DPKASRD-.....F..V..FR--.---EAEPGRY.....LIVSARP...PGDG---.
8 LYPcD...AGPDPRAR.....FgvL..FRIE.D--TPAGAHI.....LLQSAHE...PDLTRLP.
9 LFP.N...RPDAARD-.....F..L..FHVE.KRNTPEGCHV.....LLQSAQM...P----VS.
10 LFP.E...DADAERD-.....F..L..FRVE.R-SGQQSVEV.....LLQSRRE...PTMAASR.
11 LFP.DtdsPLPRKSVD.....I..L..FRFE.QLAG-QPPFF.....LIQSTVA...PKQ--VD.
12 LFA.D...APDRTRD-.....F..L..FREQ.D----EPYTF.....LTVSRRQ...PEDT---.
13 SFP.Tll.PSDTDGPR.....V..L..WRID.RTSRAEVFLY.....IV-SPPK...PDLTHLV.
14 LFP.N...SSERKRDH.....-..L..FRVE.NINTSGQVMV.....LLQSASE...PQSNV--.
15 LFE.Dv..RSEAEKRSsvpsgF..L..F-AD.KGGDAKGRKI.....LILSDRP...P----LQ.
16 LLG.E...SFGKG---.....V..LqpFRLMvAPNGATGTLYay9taLVQTTRDfglPDALAVC.
17 ---.-...--------.....-..-..----.----------.....----HLC...PELHEHD.
18 ---.-...--------.....-..-..----.----------.....----HLC...PTLHEHD.
19 ---.-...--------.....-..-..----.----------.....--MSENE...P-IDELN.
20 ---.-...--------.....-..-..----.---------F.....SAIAHFE...PKLHTLD.
21 ---.-...--------.....-..-..----.----------.....-------...-------.
80 90 100 110
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1 .E..GY.....AQVF...P..PKPFHPA..LKPGQRLRFRLRANP...AK.RL.AA...TG.K..
2 .D..--.....---V...Q..TRPFAPT..LSAGQTLRFNLRANP...TV.CK.--...NG.K..
3 .T..--.....---I...E..CRSFVPE..LRTGQQLCFNLRANP...TI.CK.--...AG.K..
4 .S..PL.....FEV-...E..TKAFYPQ..LKEGQRLAFKLRVNP...TI.CItDP...SG.Krq
5 .H..SL.....F-LI...E..TKLFNPQ..LTNGLELDFQLRANP...V-.-I.TR...NG.K..
6 lP..GY.....LQRPa..E..CKALDLEalIRPQWRYRFRLLANP...T-.-V.TR...AG.K..
7 .Q..GL.....WR-L...E..TKPYAPA..FREGQRFGFTLRANPataVK.QA.GEt..RG.K..
8 .D..GY.....GQAItr.P..LDPLLDA..LKPGLTIRYRCTASP...VR.KP.GA...NT.Ral
9 .T..AV.....ATVI...K..TKQVEFQ..LQVGVPLYFRLRANP...IK.TI.LD...NQ.Kr1
10 .E..VL.....L--M...G..SKPYLLS..LQQDQQLRFMLVANP...IK.TI.ND...ES.Ar1
11 .N..LD.....SEVQ...H..RTVSLRR..FSPKSAVRFRISING...IR.RQ.TTeh.NGrK..
12 .T..GW.....WS-I...Q..IKPYAPK..LQAGDAVAFSLRVNA...VV.KR.NE...NG.Kqr
13 .EqaGWptqptWESY...D..YTPFLSR..LAKGDVWAFRLTANPvhsIR.RK.AG...EP.T..
14 .-..-K.....ATVL...Q..SKLFDPQ..ISQGEYYKFKLLANP...TK.CL.SQ...GK.K..
15 .P..AH.....GELV...-..SRPVPEE..FLQHRFYKFEVTLNP...TR.KE.NK...SG.K..
16 .D..PA.....R--L...A..AKAMPED..WREGRRLAFDLRARP...VR.RLlKP...AG.Vf1
17 .S..LS.....IQTIsglP..DRPGILR..LTANSRLRIRIPVEQ...IP.LV.YPl..AG.K..
18 .S..LS.....IQTIsglP..DRPGILR..LTANSQLRIRIPVEQ...IP.LV.YPl..AG.K..
19 .-..-V.....WD-I...D..VKQYDPI..LKSGQKLAFSLRANP...IVsKR.DE...ND.Kqh
20 .T..LG.....IQTI...AgiPKDGVIN..LTQNSRLRIRIPVNQ...VR.LV.YPl..AG.K..
21 .-..--.....--MR...N..LDPFLAR..LDKGSRVRYRIVASP...TK.RL.GRsenNT.Q..
120 130 140 150
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1 ...RVA.L....KTPA.....EKV...A...WLE.RRL.E...EGGFRLLEGERGPWVQI..LQD
2 ...RHD.L....LMEAkr9gdSQD...I...WSY.QQQ.A...ALTWLARQGEQNGFTLR..--E
3 ...RHD.L....LMEAkr9aeGSD...V...WLH.QQQ.A...ALDWLAAQGERSGFTLL..--D
4 ...RHD.V....LMHAk12eqGKI...K...AMM.EN-.-...AARNWLLNHRRMQQWGI..QFD
5 ...RSD.V....MMNAk20qqAAQ...A...WLE.QQG.Q...QHGFRLIAPEPDDFAMW..AGD
6 ...RRG.L....LGEA.....EQL...A...WLQ.RQG.E...RHGFAV------KAVLV..SAS
7 ...RVD.A....IMHA.....KTRsatP...LTV.EDR.E...RVALDWLLDRQQGFGVL..FER
8 y..NLP.A....VVPL.....NGA...AadeWWT.RQA.D...AAGLKPLALHPHPL---..--D
9 1rcRVP.L....IKEA.....EQI...A...WLQ.RKL.-...--GNAARVEDVHPISER..PQ-
10 1kcRVP.L....IREE.....DLR...A...WLK.RKL.E...--GVAVIE-----AVEV..EKR
11 ...RIT.TspvpFDSD.....EKA...P...SHI.TRM.T...PWVQKKLNGALRN-VEI..LNH
12 ...RFD.I....VQDAcl7elNQN...A...QMP.TRA.EiaqEAGTRWLLARQQALGLS..IES
13 ...KLTaH....LTQR.....YQK...K...WLL.QRQ.D...AAGFRVVEKPAEKRRLP..EGD
14 ...VIE.I....KDEN.....EQI...Q...WLQ.RKL.R...GANVTV-----------..--T
15 ...RVP.I....KTRE.....EVA...A...WFGgKSQ.T...SWGFSV-DPARLDVRML..---
16 6lrRFP.E....GRPA.....EGV...A...GAP.ITR.E...GVYFQWLAERLSGAARV..--E
17 ...SLT.I....GIHKi17vlKSR...I...TVI.KGFsE...PENFLEAAQKQLNAREI..SGR
18 ...SLT.I....GIHKi17vlKSR...I...TVI.KGFsE...PETFLEAAQKQLNAREI..SGR
19 ...RHD.V....VMDEk12diEPN...M...PDI.VQR.K...GSEWLLRKGDMNGFSIN..AEQ
20 ...SLR.I....GKHTi17klRSR...I...VVI.RGYeE...PESFLVVAQRQLEQLGI..--Q
21 ...RLG.L....KEPP.....KKP...ReytWAL.RGA.A...AEEWWHSRAAANGLELLstYAQ
160 170 180 1
| | |
1 TF.....LEV..R.....RKK..D.....GEEAGKL.L...Q.VQAVLFEGRLE..VV..DPERA
2 AS.....VDA..Y.....RQQqiR.....RGKDRQM.I...Q.FSSVDYTGVLV..IN..EPALF
3 TS.....VDA..Y.....RQQqlR.....RENSRQL.I...Q.FSSVDYTGMLT..VT..DPGLF
4 NL.....LDIegY.....TQH..Rs....VKKQGQK.I...Q.FSSVDFQGLLT..IT..NGELY
5 EYse9gcVQA..Y.....QQH..Rfv...RKDQETP.I...T.FSSVDFSGALC..IT..DAALF
6 DL.....LDS..R.....RKG..-.....----GAP.I...V.LQRVCFEGLLQ..VV..EADAL
7 AL.....CSAggY.....RQV..R.....VPRGGKA.I...T.FSVIDYEGVFT..VR..DPGLL
8 AA.....QGV..-.....RAG..N.....GDK--QR.I...R.HNRIRFDGSAT..IT..DPDLL
9 --.....---..Y.....FSG..D.....G-KSGK-.-...-.IQTVCFEGVLT..IN..DAPAL
10 PA.....MNF..-.....RKA..R.....EKRVGK-.-...-.VQAVSFHGVLS..VT..DPVGL
11 QR.....EVI..G.....TKH..R.....GGKAASMtI...Q.IDTV--DGFGI..VE..DPELL
12 AA.....ILV..Egc9vkRAT..R.....DTRSG-V.V...S.LGIMDLQGTAE..VK..DPQLL
13 EH.....ELI..V.....HNR..Rdw6skGARKGRP.V...S.LVTVTFDGRLE..VT..DPDAL
14 AL.....ESV..L.....VKS..R.....-----KS.F...T.SRFVCFEGILQ..VD..KPDQI
15 PV.....MQF..S.....KQG..D.....-----RT.V...T.HGAARVSGMLR..VE..NRDLF
16 EV.....RLA..R.....FER..Ra....VLRGSKS.I...EgPDAV-FHGELV..IL..DGAKF
17 VT.....LLK..D.....PEG..N.....PKRNTIK.Ik..R.FTIVGF-GLKVegLN..EKDSL
18 VI.....LLQ..D.....PKG..N.....PKRNTIK.Ik..R.FTIVGF-GLKVegLN..EKDSL
19 IR.....VDA..Y.....QNH..Klf...KPKGKHH.V...S.FSTVDIVGTLT..VT..DPDIF
20 AI.....ASI..P.....TKA..N.....GKPIRRT.IkikR.FTVVGF-GLEV..INlsDEDSL
21 TL.....DDV..R.....DPG..T.....ADRSRK-.I...R.HPAVRFDGEAV..IS..DVDAV
90 200 210
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1 LATLRRGVGPGKALGLGL.LS...VAP....
2 LQRLAQGFGKSRAFGCGM.MM...IKPgdd.
3 LQRLSQGYGKSRAFGCGL.ML...IKPgae.
4 LEQYAKGFGRAKAMGCGL.ML...IRTv...
5 KQALFSGLGKSKALGCGM.LM...VKRkr..
6 RRALASGIGPAKAFGCGL.LS...VARc...
7 GQALVRGIGKAKAYGCGL.ML...LRRlae.
8 RQKITEGIGRGKAYGCGL.LS...IAPtre.
9 IDLVQQGIGPAKSMGCGL.LS...LAPl...
10 ISLINTGIGPAKAFGCGL.LS...LARt...
11 NELILHGVGRAKAYGCGL.LS...VSEi...
12 LQALFQGVGPAKGFGCGL.LL...IRRv...
13 RRALISGIGRAKAYGCGL.MT...LAPvg..
14 YSVLVMGIGRKKHAGAGL.LS...LAKas..
15 IESFNKGIGRGRAFGFGL.LQ...IEPlkd.
16 AGHLASGLGRHTAYGYGM.ML...LRPar..
17 -ELQATGLGGKRRMGCGV.FY...GDA....
18 -ELQVTGLGGKRRMGCGV.FY...GDS....
19 RDALFKGIGPAKGFGCGM.LL...VRPlr..
20 R-LQIHGVGGKQKMGCGLfMP...IKErq..
21 RHAVLNGIGRGKSYGCGL.LSlalIEE....