# List of top-scoring protein chains for T0272.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1mnp	357	1.84e+00	1arv	a.93.1.1	18668
1mn1	357	1.95e+00	1arv	a.93.1.1	18667
1mn2	357	2.11e+00	1arv	a.93.1.1	18666
1ofcX	304	6.28e+00		a.4.1.3	-195
				unknown_sccs	-199
				unknown_sccs	-978
1clc	639	6.84e+00	1clc	a.102.1.2	18835
				b.1.18.2	21872
1vyrA	364	7.78e+00			
1vypX	364	8.30e+00			
1vysX	364	8.45e+00			
1skoA	143	9.18e+00			
1pi4A	358	1.40e+01		e.3.1.1	-11774
1o07A	358	1.41e+01		e.3.1.1	-11772
1l0fA	358	1.44e+01		e.3.1.1	73398
1ao5A	237	1.49e+01	5ptp	b.47.1.2	26334
1my8A	358	1.59e+01		e.3.1.1	85236
1l0eA	358	1.59e+01		e.3.1.1	73396
1l0gA	358	1.59e+01		e.3.1.1	73400
1i5qA	358	1.59e+01	1gceA	e.3.1.1	61820
1fsyA	358	1.59e+01	1gceA	e.3.1.1	60016
1l0dA	358	1.61e+01		e.3.1.1	73394
2por	301	1.90e+01	2por	f.4.3.1	43759
1llc	325	1.97e+01	1hyhA	c.2.1.5	30176
				d.162.1.1	42143
1mzeA	351	2.29e+01		b.82.2.6	79694
1h2kA	349	2.33e+01		b.82.2.6	76572
1na6A	404	2.34e+01		unknown_sccs	-4715
				unknown_sccs	-7564
1lbqA	362	2.69e+01		c.92.1.1	77877
2gdm	153	2.88e+01	2gdm	a.1.1.2	15212
1es6A	296	3.04e+01	1es6A	b.31.1.1	83048
				b.31.1.1	83049
1jxkA	491	3.06e+01		b.71.1.1	63316
				c.1.8.1	63317
1iz3A	349	3.35e+01		b.82.2.6	83831
1uenA	125	3.85e+01		b.1.2.1	-2776
1l4iA	206	3.92e+01		b.1.11.1	73564
				b.7.2.1	73565
1gc9A	345	3.99e+01	1cnzA	c.77.1.1	35037