# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1nykA	165	2.26e+00		b.33.1.1	86408
1f15A	218	2.38e+00	1f15B	b.121.4.5	23320
1jx2B	315	2.55e+00		c.37.1.8	67404
1bjt	793	3.57e+00	1bjt	e.11.1.1	43249
1r3eA	309	5.62e+00		b.122.1.1	-5118
				unknown_sccs	-10146
1mhyD	521	6.26e+00	1mhyD	a.25.1.2	16780
1mbyA	88	7.34e+00		d.223.1.1	78931
1heiA	451	8.44e+00	1heiA	c.37.1.14	32463
				c.37.1.14	32464
1bquA	215	8.69e+00	1bquA	b.1.2.1	22066
				b.1.2.1	22067
1hdkA	141	8.82e+00		b.29.1.3	65807
1nar	290	8.97e+00	1nar	c.1.8.5	28988
1kv7A	488	9.35e+00		b.6.1.3	68873
				b.6.1.3	68874
				b.6.1.3	68875
1lcl	142	9.46e+00	1lcl	b.29.1.3	24216
1nciA	110	9.48e+00	1edhA	b.1.6.1	22191
1j7dA	145	9.82e+00	1jatB	d.20.1.1	62680
1dyoA	160	9.94e+00	1dyoA	b.18.1.7	23771
1oaoC	729	1.03e+01		e.26.1.3	86746
1obwA	175	1.05e+01	2prd	b.40.5.1	25416
1bpoA	494	1.20e+01	1bpoA	a.118.1.4	19143
				b.69.6.1	27670
1iw7C	1119	1.27e+01		e.29.1.1	71474
1nxjA	183	1.30e+01		c.8.7.1	86382
1dkzA	219	1.32e+01	1dkzA	unknown_sccs	-445
				unknown_sccs	-3060
1meoA	209	1.42e+01		c.65.1.1	79035
1a0p	290	1.47e+01	1a0p	a.60.9.1	18105
				d.163.1.1	42165
1i40A	175	1.49e+01		b.40.5.1	66024
1uwwA	191	1.72e+01			
1k8wA	327	1.80e+01		b.122.1.1	83094
				unknown_sccs	-10143
1m1cA	680	1.87e+01		e.42.1.1	78395
1hfuA	503	1.97e+01		b.6.1.3	65827
				b.6.1.3	65828
				b.6.1.3	65829
1ixmA	192	2.01e+01	1ixmA	d.123.1.1	41114
1avwB	171	2.07e+01	1wba	b.42.4.1	25599
1ewnA	219	2.10e+01	1bnkA	b.46.1.2	25762
1jpyA	137	2.36e+01		g.17.1.6	67065
1e19A	314	2.45e+01	1b7bA	c.73.1.1	34967
1tif	78	2.51e+01	1tif	d.15.8.1	37836
1n0uA	842	2.52e+01		b.43.3.1	79757
				c.37.1.8	79758
				d.14.1.1	79759
				d.58.11.1	79760
				d.58.11.1	79761
1fs1B	141	2.57e+01	1vcbB	a.157.1.1	19252
				d.42.1.1	38664
1c1lA	136	2.72e+01	1c1lA	b.29.1.3	24219
1qysA	106	2.96e+01		unknown_sccs	-13432
1vddA	228	3.07e+01			
1a65A	504	3.44e+01	1a65A	b.6.1.3	23148
				b.6.1.3	23149
				b.6.1.3	23150
1ux6A	350	3.58e+01		unknown_sccs	-3451
				unknown_sccs	-12886
1pmi	440	3.70e+01	1pmi	b.82.1.3	28114
1senA	164	3.76e+01			
1utcA	363	3.91e+01		a.118.1.4	-1568
				b.69.6.1	-4612