# List of top-scoring protein chains for t04-100-30-near-backbone-11 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1ofcX	304	7.56e-01		a.4.1.3	-195
				unknown_sccs	-199
				unknown_sccs	-978
1clc	639	2.03e+00	1clc	a.102.1.2	18835
				b.1.18.2	21872
1h2kA	349	2.40e+00		b.82.2.6	76572
1hrkA	359	5.37e+00	1hrkA	c.92.1.1	61228
1tif	78	6.64e+00	1tif	d.15.8.1	37836
1es6A	296	6.70e+00	1es6A	b.31.1.1	83048
				b.31.1.1	83049
2gdm	153	7.41e+00	2gdm	a.1.1.2	15212
1b8aA	438	8.31e+00	1b8aA	b.40.4.1	25244
				d.104.1.1	40765
1oh0A	131	9.04e+00		d.17.4.3	87004
1bquA	215	9.17e+00	1bquA	b.1.2.1	22066
				b.1.2.1	22067
1ux6A	350	9.40e+00		unknown_sccs	-3451
				unknown_sccs	-12886
1fqiA	147	9.56e+00	1agrE	a.91.1.1	18542
1skoA	143	1.05e+01			
1dyoA	160	1.12e+01	1dyoA	b.18.1.7	23771
1sra	151	1.47e+01	1sra	a.39.1.3	17190
1mnaA	298	1.80e+01		c.69.1.22	79322
1kq6A	141	1.81e+01		d.189.1.1	-9926
1bkzA	135	1.85e+01	1a3k	b.29.1.3	24202
1k8wA	327	2.03e+01		b.122.1.1	83094
				unknown_sccs	-10143
1kwmA	402	2.12e+01		c.56.5.1	73079
				d.58.3.1	73080
1giqA	413	2.30e+01		d.166.1.1	76224
				d.166.1.1	76225
1m1cA	680	2.30e+01		e.42.1.1	78395
1vk6A	269	2.53e+01		unknown_sccs	-10923
				unknown_sccs	-10924
1avaC	181	2.54e+01	1avaC	b.42.4.1	25604
1uwwA	191	2.70e+01			
1v5mA	136	3.04e+01			
1pba	81	3.16e+01	1pytA	d.58.3.1	39067
1dkzA	219	3.20e+01	1dkzA	unknown_sccs	-445
				unknown_sccs	-3060
1h98A	78	3.35e+01		d.58.1.2	65743
1kmtA	141	3.46e+01		b.1.18.8	77442
1hdkA	141	3.46e+01		b.29.1.3	65807
1a0p	290	3.58e+01	1a0p	a.60.9.1	18105
				d.163.1.1	42165
1ireA	204	3.64e+01		d.149.1.1	76769
1cs1A	386	3.70e+01	1ibjA	c.67.1.3	34399
1dboA	506	3.71e+01	1dbgA	b.80.1.4	28034
1nxcA	478	3.73e+01		a.102.2.1	-1333
1pmy	123	3.75e+01	1bqk	b.6.1.1	22888
1dbgA	506	3.76e+01	1dbgA	b.80.1.4	28033
1h3fA	432	3.78e+01		c.26.1.1	76631
				d.66.1.4	76632
1tvdA	116	3.80e+01	1tvdA	b.1.1.1	20650
1heiA	451	3.89e+01	1heiA	c.37.1.14	32463
				c.37.1.14	32464
1hulA	108	3.94e+01	1hulA	a.26.1.2	16865
1lcl	142	3.94e+01	1lcl	b.29.1.3	24216